DMR 12416 chr2:241562801-241563000 (200bp)
| DMR Stats | |
|---|---|
| Position | chr2:241562801-241563000 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | GPR35 (0bp away) |
| ANODEV p-value | 0.00433654772708 |
| Frequencies | Benign: 5.0 (71.43%), Low: 0.0 (0.0%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12416 | GPR35 | 17829 | uc010fzh.2 | chr2 | 241544825 | 241570676 | + | 200 | 100.0 | 1.4 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0) | 0.0 |
| 12416 | GPR35 | 17829 | uc010fzi.2 | chr2 | 241544825 | 241570676 | + | 200 | 100.0 | 1.2 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 12416 | chr2 | 241562881 | 241563090 | wgEncodeRegDnaseClusteredV2 | 5 | score:940, srow:697446 |
| 12416 | chr2 | 241562999 | 241563008 | phastConsElements100way | lod=16 | score:268, srow:5220810 |
| 12416 | chr2 | 241562470 | 241562910 | cpgIsland | CpG: 38 | length:441, cpgNum:38, gcNum:270, perCpg:17.2, perGc:61.2, obsExp:0.95, srow:16207 |
| 12416 | chr2 | 241562911 | 241564910 | cpgShore | — | values(x.gr)[overs$srow, ]:29200 |
- 4 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 12416 | cellmeth_recounts | PrEC: 72, LNCaP: 6, DU145: 0 |  |
| 12416 | cellmeth_diffreps_PrECvsLNCaP | A=298, B=19, Length=840, Event=Down, log2FC=-3.97, padj=0 |  |
| 12416 | cellmeth_diffreps_PrECvsDU145 | A=298, B=13, Length=840, Event=Down, log2FC=-4.52, padj=0 |  |
| 12416 | cellexp | id=ENSG00000178623, name=GPR35, PrEC=2, str=23, LNCaP=71, str=11, DU145=16, str=6 |  |
| 12416 | tcgaexp | gene=GPR35, entrez=2859, pos=chr2:241544825-241570676(+), B=54, L=56, M=62, H=83 |  |