DMR 12435 chr2:242169201-242169350 (150bp)
| DMR Stats | |
|---|---|
| Position | chr2:242169201-242169350 (View on UCSC) |
| Width | 150bp |
| Genomic Context | exon |
| Nearest Genes | HDLBP (0bp away) |
| ANODEV p-value | 0.00327336535437 |
| Frequencies | Benign: 6.0 (85.71%), Low: 1.0 (16.67%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12435 | HDLBP | 17842 | uc002waz.3 | chr2 | 242166682 | 242212246 | - | 150 | 100.0 | 0.07 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (68.67), I27 (31.33), E28 (0) | 0.0 |
| 12435 | HDLBP | 17842 | uc002wba.3 | chr2 | 242166682 | 242255115 | - | 150 | 100.0 | 0.07 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (68.67), I27 (31.33), E28 (0) | 0.0 |
| 12435 | HDLBP | 17842 | uc021vzg.1 | chr2 | 242166682 | 242212246 | - | 150 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (68.67), I27 (31.33), E28 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 12435 | chr2 | 242169241 | 242169455 | wgEncodeRegDnaseClusteredV2 | 2 | score:262, srow:698099 |
| 12435 | chr2 | 242169268 | 242169609 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:279, expCount:1, expNums:192, expScores:279, srow:2434429 |
| 12435 | chr2 | 242169263 | 242169278 | tfbsConsSites | V$ARP1_01 | score:793, zScore:1.75, srow:3027891 |
| 12435 | chr2 | 242169285 | 242169290 | tfbsConsSites | V$AML1_01 | score:1000, zScore:1.78, srow:3027892 |
| 12435 | chr2 | 242169287 | 242169295 | tfbsConsSites | V$PAX2_02 | score:968, zScore:1.64, srow:3027893 |
| 12435 | chr2 | 242169310 | 242169328 | tfbsConsSites | V$GR_Q6 | score:828, zScore:1.77, srow:3027894 |
| 12435 | chr2 | 242169327 | 242169339 | tfbsConsSites | V$CHOP_01 | score:828, zScore:1.68, srow:3027895 |
| 12435 | chr2 | 242169347 | 242169369 | tfbsConsSites | V$PPARG_02 | score:726, zScore:2.48, srow:3027896 |
| 12435 | chr2 | 242169277 | 242169277 | cosmic | COSM1406934 | srow:736232 |
| 12435 | chr2 | 242169308 | 242169308 | cosmic | COSM1406935 | srow:736233 |
| 12435 | chr2 | 242169246 | 242169260 | phastConsElements100way | lod=114 | score:462, srow:5223581 |
| 12435 | chr2 | 242169264 | 242169265 | phastConsElements100way | lod=19 | score:285, srow:5223582 |
| 12435 | chr2 | 242169267 | 242169274 | phastConsElements100way | lod=104 | score:453, srow:5223583 |
| 12435 | chr2 | 242169276 | 242169277 | phastConsElements100way | lod=35 | score:345, srow:5223584 |
| 12435 | chr2 | 242169279 | 242169301 | phastConsElements100way | lod=249 | score:540, srow:5223585 |
| 12435 | chr2 | 242169303 | 242169304 | phastConsElements100way | lod=37 | score:351, srow:5223586 |
| 12435 | chr2 | 242169306 | 242169312 | phastConsElements100way | lod=47 | score:375, srow:5223587 |
| 12435 | chr2 | 242169315 | 242169316 | phastConsElements100way | lod=29 | score:327, srow:5223588 |
| 12435 | chr2 | 242169318 | 242169319 | phastConsElements100way | lod=26 | score:316, srow:5223589 |
| 12435 | chr2 | 242169327 | 242169340 | phastConsElements100way | lod=128 | score:474, srow:5223590 |
| 12435 | chr2 | 242169342 | 242169349 | phastConsElements100way | lod=49 | score:379, srow:5223591 |
- 21 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 12435 | cellmeth_recounts | PrEC: 25, LNCaP: 5, DU145: 1 |  |
| 12435 | cellmeth_diffreps_PrECvsLNCaP | A=446, B=49, Length=1780, Event=Down, log2FC=-3.19, padj=0 |  |
| 12435 | cellmeth_diffreps_PrECvsDU145 | A=451, B=29, Length=1920, Event=Down, log2FC=-3.96, padj=0 |  |
| 12435 | cellexp | id=ENSG00000115677, name=HDLBP, PrEC=55932, str=42530, LNCaP=50634, str=44086, DU145=35898, str=32552 |  |
| 12435 | tcgameth | site:cg14707638, B=0.8, L=0.71, H=0.76 |  |
| 12435 | tcgaexp | gene=HDLBP, entrez=3069, pos=chr2:242166682-242255115(-), B=50451, L=66494, M=65848, H=64561 |  |