DMR 12475 chr3:9143151-9143350 (200bp)
| DMR Stats | |
|---|---|
| Position | chr3:9143151-9143350 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | SRGAP3 (0bp away) |
| ANODEV p-value | 0.00159721742854 |
| Frequencies | Benign: 5.0 (71.43%), Low: 2.0 (33.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12475 | SRGAP3 | 19764 | uc003brf.2 | chr3 | 9022276 | 9291369 | - | 200 | 100.0 | 0.4 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0) | 0.0 |
| 12475 | SRGAP3 | 19764 | uc003brg.2 | chr3 | 9022276 | 9291369 | - | 200 | 100.0 | 0.66 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0) | 0.0 |
| 12475 | SRGAP3 | 19764 | uc003bri.1 | chr3 | 9056426 | 9258444 | - | 200 | 100.0 | 1.08 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0) | 0.0 |
| 12475 | SRGAP3 | 19764 | uc003brk.4 | chr3 | 9100420 | 9291369 | - | 200 | 100.0 | 0.6 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 12475 | chr3 | 9142986 | 9143270 | wgEncodeRegDnaseClusteredV2 | 15 | score:418, srow:784451 |
| 12475 | chr3 | 9143286 | 9143435 | wgEncodeRegDnaseClusteredV2 | 3 | score:274, srow:784452 |
| 12475 | chr3 | 9142954 | 9143263 | wgEncodeRegTfbsClusteredV3 | BHLHE40 | score:243, expCount:1, expNums:472, expScores:243, srow:2726272 |
| 12475 | chr3 | 9142961 | 9143316 | wgEncodeRegTfbsClusteredV3 | MAX | score:280, expCount:1, expNums:511, expScores:280, srow:2726273 |
| 12475 | chr3 | 9142974 | 9143277 | wgEncodeRegTfbsClusteredV3 | ATF3 | score:182, expCount:3, expNums:135,208,469, expScores:181,182,175, srow:2726274 |
| 12475 | chr3 | 9142982 | 9143257 | wgEncodeRegTfbsClusteredV3 | USF2 | score:618, expCount:2, expNums:360,550, expScores:618,338, srow:2726275 |
| 12475 | chr3 | 9142985 | 9143254 | wgEncodeRegTfbsClusteredV3 | USF1 | score:1000, expCount:5, expNums:118,161,202,243,265, expScores:262,1000,188,1000,141, srow:2726276 |
| 12475 | chr3 | 9143140 | 9143153 | tfbsConsSites | V$CEBPA_01 | score:876, zScore:1.67, srow:3292091 |
| 12475 | chr3 | 9143144 | 9143154 | tfbsConsSites | V$NFY_Q6 | score:970, zScore:2.32, srow:3292092 |
| 12475 | chr3 | 9143295 | 9143303 | tfbsConsSites | V$AREB6_04 | score:951, zScore:1.7, srow:3292093 |
- 10 featuress
