DMR 1248 chr2:162101001-162101150 (150bp)

DMR Stats
Positionchr2:162101001-162101150 (View on UCSC)
Width150bp
Genomic Contextpromoter
Nearest GenesAK027541 (99bp away)
ANODEV p-value0.0108104638166
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
1248 chr2 162101101 162101990 wgEncodeRegDnaseClusteredV2 63 score:1000, srow:661916
1248 chr2 162100882 162101784 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:26, expNums:104,105,123,130,131,147,163,168,191,306,326,328,330,332,334,336,338,340,362,402,446,563,564,583,585,613, expScores:539,425,345,323,290,406,492,550,331,386,1000,173,199,313,249,221,183,433,160,387,359,244,249,471,430,177, srow:2315494
1248 chr2 162100893 162101328 wgEncodeRegTfbsClusteredV3 MAZ score:201, expCount:1, expNums:297, expScores:201, srow:2315495
1248 chr2 162100904 162101587 wgEncodeRegTfbsClusteredV3 PML score:284, expCount:1, expNums:103, expScores:284, srow:2315496
1248 chr2 162100950 162101433 wgEncodeRegTfbsClusteredV3 ZBTB33 score:244, expCount:3, expNums:71,120,165, expScores:244,214,221, srow:2315497
1248 chr2 162100991 162101430 wgEncodeRegTfbsClusteredV3 TEAD4 score:171, expCount:1, expNums:201, expScores:171, srow:2315498
1248 chr2 162101002 162101676 wgEncodeRegTfbsClusteredV3 TAF1 score:345, expCount:5, expNums:115,127,132,157,169, expScores:148,183,112,230,166, srow:2315499
1248 chr2 162101020 162101402 wgEncodeRegTfbsClusteredV3 CHD2 score:343, expCount:4, expNums:288,345,380,427, expScores:335,195,343,229, srow:2315500
1248 chr2 162101030 162101175 wgEncodeRegTfbsClusteredV3 YY1 score:257, expCount:1, expNums:119, expScores:257, srow:2315501
1248 chr2 162101032 162101411 wgEncodeRegTfbsClusteredV3 TBP score:451, expCount:3, expNums:317,412,452, expScores:218,451,195, srow:2315502
1248 chr2 162101052 162101676 wgEncodeRegTfbsClusteredV3 MAX score:145, expCount:1, expNums:395, expScores:143, srow:2315503
1248 chr2 162101054 162101357 wgEncodeRegTfbsClusteredV3 BRCA1 score:221, expCount:1, expNums:374, expScores:221, srow:2315504
1248 chr2 162101089 162101758 wgEncodeRegTfbsClusteredV3 RBBP5 score:261, expCount:1, expNums:8, expScores:261, srow:2315505
1248 chr2 162101146 162101681 wgEncodeRegTfbsClusteredV3 SIN3A score:171, expCount:1, expNums:312, expScores:171, srow:2315506
1248 chr2 162099440 162101439 cpgShore — values(x.gr)[overs$srow, ]:28210
  • 15 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
1248 cellmeth_recounts PrEC: 27, LNCaP: 130, DU145: 0
1248 cellmeth_diffreps_PrECvsLNCaP A=90, B=247, Length=840, Event=Up, log2FC=1.46, padj=0
1248 cellmeth_diffreps_PrECvsDU145 A=90, B=0, Length=880, Event=Down, log2FC=-Inf, padj=0
1248 cellmeth_diffreps_LNCaPvsDU145 A=266.19, B=0, Length=1000, Event=Down, log2FC=-Inf, padj=0
1248 cellexp id=ENSG00000235724, name=AC009299.2, PrEC=20, str=9, LNCaP=2, str=1, DU145=10, str=8