DMR 12489 chr3:10491301-10491450 (150bp)
| DMR Stats | |
|---|---|
| Position | chr3:10491301-10491450 (View on UCSC) |
| Width | 150bp |
| Genomic Context | exon |
| Nearest Genes | ATP2B2 (0bp away) |
| ANODEV p-value | 0.00887192695546 |
| Frequencies | Benign: 5.0 (71.43%), Low: 2.0 (33.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12489 | ATP2B2 | 19801 | uc003bvt.3 | chr3 | 10365707 | 10547268 | - | 150 | 100.0 | 0.7 | 0 | 0.0 | E1 (0), I1 (0), E2 (100), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0) | 0.0 |
| 12489 | ATP2B2 | 19801 | uc003bvv.3 | chr3 | 10365707 | 10547268 | - | 150 | 100.0 | 0.42 | 0 | 0.0 | E1 (0), I1 (0), E2 (100), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0) | 0.0 |
| 12489 | ATP2B2 | 19801 | uc003bvw.3 | chr3 | 10365707 | 10749716 | - | 150 | 100.0 | 0.9 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (100), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0) | 0.0 |
| 12489 | ATP2B2 | 19801 | uc010hdp.2 | chr3 | 10429568 | 10547268 | - | 150 | 100.0 | 1.06 | 0 | 0.0 | E1 (0), I1 (0), E2 (100), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 12489 | chr3 | 10491266 | 10491475 | wgEncodeRegDnaseClusteredV2 | 5 | score:214, srow:785564 |
| 12489 | chr3 | 10491355 | 10491376 | tfbsConsSites | V$OLF1_01 | score:825, zScore:2.19, srow:3296196 |
| 12489 | chr3 | 10491428 | 10491445 | tfbsConsSites | V$CEBP_C | score:821, zScore:2.02, srow:3296197 |
| 12489 | chr3 | 10491430 | 10491448 | tfbsConsSites | V$HNF4_01 | score:818, zScore:1.87, srow:3296198 |
| 12489 | chr3 | 10491321 | 10491329 | phastConsElements100way | lod=17 | score:274, srow:5684492 |
| 12489 | chr3 | 10491372 | 10491373 | phastConsElements100way | lod=13 | score:247, srow:5684493 |
| 12489 | chr3 | 10491382 | 10491392 | phastConsElements100way | lod=49 | score:379, srow:5684494 |
| 12489 | chr3 | 10491407 | 10491411 | phastConsElements100way | lod=21 | score:295, srow:5684495 |
| 12489 | chr3 | 10491447 | 10491448 | phastConsElements100way | lod=18 | score:280, srow:5684496 |
- 9 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 12489 | cellmeth_recounts | PrEC: 11, LNCaP: 0, DU145: 0 |  |
| 12489 | cellmeth_diffreps_PrECvsLNCaP | A=21, B=0, Length=360, Event=Down, log2FC=-Inf, padj=4.02459409075954e-06 |  |
| 12489 | cellmeth_diffreps_PrECvsDU145 | A=21, B=0, Length=300, Event=Down, log2FC=-Inf, padj=5.26387855513023e-06 |  |
| 12489 | cellexp | id=ENSG00000157087, name=ATP2B2, PrEC=1, str=0, LNCaP=3, str=2, DU145=6, str=3 |  |
| 12489 | tcgaexp | gene=ATP2B2, entrez=491, pos=chr3:10365707-10749716(-), B=11, L=5, M=8, H=9 |  |