DMR 12638 chr3:47889651-47889950 (300bp)

DMR Stats
Positionchr3:47889651-47889950 (View on UCSC)
Width300bp
Genomic Contextexon
Nearest GenesDHX30 (0bp away)
ANODEV p-value2.2935747023e-06
FrequenciesBenign: 5.0 (71.43%), Low: 2.0 (33.33%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
12638 DHX30 20106 uc003crt.3 chr3 47844399 47891686 + 300 100.0 5.54 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (6.33), E16 (69), I16 (25), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0) 0.0
12638 DHX30 20106 uc003cru.3 chr3 47844399 47891686 + 300 100.0 9.34 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (6.33), E15 (69), I15 (25), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
12638 chr3 47889241 47889910 wgEncodeRegDnaseClusteredV2 8 score:420, srow:804645
12638 chr3 47889946 47890255 wgEncodeRegDnaseClusteredV2 14 score:274, srow:804646
12638 chr3 47887142 47893086 wgEncodeRegTfbsClusteredV3 POLR2A score:578, expCount:32, expNums:32,41,61,62,78,105,123,130,131,146,147,163,191,192,206,228,229,256,279,308,403,445,521,522,523,525,526,527,616,622,634,637, expScores:218,152,223,245,200,451,279,261,293,478,454,231,325,239,198,189,491,198,240,207,250,89,199,198,293,206,326,192,244,237,247,116, srow:2791176
12638 chr3 47889718 47889746 tfbsConsSites V$MYOGNF1_01 score:738, zScore:1.73, srow:3351546
12638 chr3 47889753 47889772 tfbsConsSites V$MYCMAX_03 score:776, zScore:1.64, srow:3351547
12638 chr3 47889756 47889769 tfbsConsSites V$MYCMAX_01 score:800, zScore:1.77, srow:3351548
12638 chr3 47889786 47889786 cosmic COSM1045693 srow:820538
12638 chr3 47889791 47889791 cosmic COSM1423645 srow:820539
12638 chr3 47889876 47889876 cosmic COSM1328193 srow:820540
12638 chr3 47889668 47889686 phastConsElements100way lod=238 score:535, srow:5804960
12638 chr3 47889688 47889698 phastConsElements100way lod=168 score:501, srow:5804961
12638 chr3 47889700 47889704 phastConsElements100way lod=41 score:361, srow:5804962
12638 chr3 47889706 47889707 phastConsElements100way lod=35 score:345, srow:5804963
12638 chr3 47889709 47889731 phastConsElements100way lod=247 score:539, srow:5804964
12638 chr3 47889733 47889746 phastConsElements100way lod=181 score:508, srow:5804965
12638 chr3 47889748 47889770 phastConsElements100way lod=218 score:526, srow:5804966
12638 chr3 47889773 47889793 phastConsElements100way lod=188 score:512, srow:5804967
12638 chr3 47889799 47889806 phastConsElements100way lod=87 score:436, srow:5804968
12638 chr3 47889808 47889809 phastConsElements100way lod=30 score:330, srow:5804969
12638 chr3 47889811 47889824 phastConsElements100way lod=195 score:515, srow:5804970
12638 chr3 47889826 47889827 phastConsElements100way lod=30 score:330, srow:5804971
12638 chr3 47889829 47889830 phastConsElements100way lod=29 score:327, srow:5804972
12638 chr3 47889832 47889866 phastConsElements100way lod=438 score:596, srow:5804973
12638 chr3 47889868 47889879 phastConsElements100way lod=142 score:484, srow:5804974
12638 chr3 47889887 47889887 phastConsElements100way lod=14 score:255, srow:5804975
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Omics Overlaps

Dmrid Omic Set Data Plot
12638 cellmeth_recounts PrEC: 28, LNCaP: 10, DU145: 4
12638 cellmeth_diffreps_PrECvsLNCaP A=42, B=8, Length=380, Event=Down, log2FC=-2.39, padj=2.55042419437611e-05
12638 cellmeth_diffreps_PrECvsDU145 A=42, B=3, Length=400, Event=Down, log2FC=-3.81, padj=2.2451465729385e-08
12638 cellexp id=ENSG00000132153, name=DHX30, PrEC=7740, str=3963, LNCaP=5821, str=5414, DU145=6035, str=5960
12638 tcgaexp gene=DHX30, entrez=22907, pos=chr3:47844399-47891686(+), B=5061, L=5898, M=5491, H=5782