DMR 12710 chr3:53128951-53129200 (250bp)
| DMR Stats | |
|---|---|
| Position | chr3:53128951-53129200 (View on UCSC) |
| Width | 250bp |
| Genomic Context | intron |
| Nearest Genes | RFT1 (0bp away) |
| ANODEV p-value | 0.0101277909601 |
| Frequencies | Benign: 6.0 (85.71%), Low: 2.0 (33.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12710 | RFT1 | 20265 | uc003dgj.3 | chr3 | 53122501 | 53164470 | - | 250 | 100.0 | 0.38 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (100), E12 (0), I12 (0), E13 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 12710 | chr3 | 53128958 | 53128961 | phastConsElements100way | lod=13 | score:247, srow:5840699 |
| 12710 | chr3 | 53128983 | 53128989 | phastConsElements100way | lod=19 | score:285, srow:5840700 |
- 2 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 12710 | cellmeth_recounts | PrEC: 7, LNCaP: 6, DU145: 9 |  |
| 12710 | cellexp | id=ENSG00000163933, name=RFT1, PrEC=2467, str=1621, LNCaP=1641, str=1801, DU145=1411, str=1770 |  |
| 12710 | cellexp | id=ENSG00000272305, name=RP11-894J14.5, PrEC=13, str=20, LNCaP=78, str=85, DU145=30, str=34 |  |
| 12710 | tcgaexp | gene=RFT1, entrez=91869, pos=chr3:53122501-53164470(-), B=1285, L=1497, M=1448, H=1368 |  |