DMR 1274 chr2:172944901-172945350 (450bp)

DMR Stats
Positionchr2:172944901-172945350 (View on UCSC)
Width450bp
Genomic Context3' end
Nearest GenesMETAP1D (0bp away)
ANODEV p-value0.00366141319931
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
1274 METAP1D 17269 uc002uhk.3 chr2 172864804 172945587 + 450 100.0 0.3 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (7.56), I9 (27.11), E10 (65.56) 100.0
1274 METAP1D 17269 uc010zdw.2 chr2 172864804 172945587 + 450 100.0 0.16 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (7.56), I9 (27.11), E10 (65.56) 100.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
1274 chr2 172944646 172945150 wgEncodeRegDnaseClusteredV2 25 score:905, srow:665451
1274 chr2 172945286 172945575 wgEncodeRegDnaseClusteredV2 5 score:195, srow:665452
1274 chr2 172944651 172944930 wgEncodeRegTfbsClusteredV3 JUND score:177, expCount:1, expNums:507, expScores:177, srow:2329868
1274 chr2 172944704 172956063 wgEncodeRegTfbsClusteredV3 EZH2 score:1000, expCount:9, expNums:3,6,13,15,21,36,38,40,43, expScores:172,337,389,319,352,209,195,216,287, srow:2329869
1274 chr2 172944845 172945357 wgEncodeRegTfbsClusteredV3 SUZ12 score:142, expCount:1, expNums:358, expScores:103, srow:2329870
1274 chr2 172944979 172945285 wgEncodeRegTfbsClusteredV3 ESR1 score:198, expCount:2, expNums:74,75, expScores:198,99, srow:2329871
1274 chr2 172945069 172945084 tfbsConsSites V$AHRARNT_01 score:830, zScore:1.69, srow:2854974
1274 chr2 172944926 172944926 cosmic COSM717730 srow:688734
1274 chr2 172945069 172945069 cosmic COSM1401277 srow:688735
1274 chr2 172945091 172945091 cosmic COSM1691393 srow:688736
1274 chr2 172945098 172945098 cosmic COSM1401278 srow:688737
1274 chr2 172945101 172945101 cosmic COSM1401279 srow:688738
1274 chr2 172944882 172944904 phastConsElements100way lod=157 score:494, srow:4948976
1274 chr2 172944906 172944910 phastConsElements100way lod=70 score:414, srow:4948977
1274 chr2 172944912 172944912 phastConsElements100way lod=15 score:262, srow:4948978
1274 chr2 172944915 172944919 phastConsElements100way lod=44 score:368, srow:4948979
1274 chr2 172944922 172944937 phastConsElements100way lod=146 score:487, srow:4948980
1274 chr2 172944959 172944960 phastConsElements100way lod=13 score:247, srow:4948981
1274 chr2 172945050 172945058 phastConsElements100way lod=96 score:445, srow:4948982
1274 chr2 172945060 172945061 phastConsElements100way lod=32 score:337, srow:4948983
1274 chr2 172945063 172945076 phastConsElements100way lod=152 score:491, srow:4948984
1274 chr2 172945078 172945091 phastConsElements100way lod=79 score:426, srow:4948985
1274 chr2 172945096 172945097 phastConsElements100way lod=39 score:356, srow:4948986
1274 chr2 172945099 172945099 phastConsElements100way lod=16 score:268, srow:4948987
1274 chr2 172945102 172945109 phastConsElements100way lod=73 score:418, srow:4948988
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  • 25 of 29 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
1274 cellmeth_recounts PrEC: 116, LNCaP: 21, DU145: 23
1274 cellmeth_diffreps_PrECvsLNCaP A=174, B=17, Length=640, Event=Down, log2FC=-3.36, padj=0
1274 cellmeth_diffreps_PrECvsDU145 A=174, B=18, Length=620, Event=Down, log2FC=-3.27, padj=0
1274 cellexp id=ENSG00000172878, name=METAP1D, PrEC=546, str=187, LNCaP=832, str=841, DU145=610, str=732
1274 tcgameth site:cg14996143, B=0.6, L=0.73, H=0.72
1274 tcgaexp gene=METAP1D, entrez=254042, pos=chr2:172864804-172945587(+), B=152, L=227, M=207, H=205