DMR 1282 chr2:175412151-175412350 (200bp)
| DMR Stats | |
|---|---|
| Position | chr2:175412151-175412350 (View on UCSC) |
| Width | 200bp |
| Genomic Context | promoter |
| Nearest Genes | BC046497, AK002090 (0bp away) |
| ANODEV p-value | 0.00447739992546 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1282 | BC046497 | 17287 | uc002uiw.3 | chr2 | 175411869 | 175639554 | + | 200 | 100.0 | 0.36 | 1 | 100.0 | E1 (0), I1 (0), E2 (27.5), I2 (73), E3 (0), I3 (0), E4 (0) | 0.0 |
| 1282 | AK002090 | 17287 | uc002uix.1 | chr2 | 175412097 | 175530417 | + | 200 | 100.0 | 0.46 | 1 | 100.0 | E1 (27.5), I1 (73), E2 (0), I2 (0), E3 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 1282 | chr2 | 175411671 | 175412176 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:517, expCount:5, expNums:228,229,520,525,622, expScores:231,517,184,199,420, srow:2334774 |
| 1282 | chr2 | 175411710 | 175412205 | wgEncodeRegTfbsClusteredV3 | TCF7L2 | score:318, expCount:1, expNums:573, expScores:318, srow:2334780 |
| 1282 | chr2 | 175412023 | 175412228 | wgEncodeRegTfbsClusteredV3 | YY1 | score:477, expCount:1, expNums:245, expScores:477, srow:2334782 |
- 3 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 1282 | cellmeth_recounts | PrEC: 19, LNCaP: 1, DU145: 17 |  |
| 1282 | cellmeth_diffreps_PrECvsLNCaP | A=35, B=2, Length=440, Event=Down, log2FC=-4.13, padj=1.58289339393762e-07 |  |
| 1282 | cellmeth_diffreps_PrECvsDU145 | A=22, B=0, Length=300, Event=Down, log2FC=-Inf, padj=2.6934033431747e-06 |  |
| 1282 | cellexp | id=ENSG00000236449, name=AC018890.6, PrEC=1, str=0, LNCaP=2, str=0, DU145=0, str=4 |  |