DMR 1293 chr2:176965201-176965350 (150bp)

DMR Stats
Positionchr2:176965201-176965350 (View on UCSC)
Width150bp
Genomic Context3' end
Nearest GenesHOXD12 (0bp away)
ANODEV p-value0.0135954910277
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
1293 HOXD12 17298 uc010zev.1 chr2 176964530 176965488 + 150 100.0 0.07 0 0.0 E1 (0), I1 (32.67), E2 (67.33) 100.0
1293 HOXD12 17298 uc021vsp.1 chr2 176964530 176965488 + 150 100.0 0.11 0 0.0 E1 (100) 100.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
1293 chr2 176964401 176965370 wgEncodeRegDnaseClusteredV2 11 score:301, srow:667532
1293 chr2 176962124 176966098 wgEncodeRegTfbsClusteredV3 EZH2 score:891, expCount:9, expNums:6,13,15,19,21,36,38,40,43, expScores:822,332,483,93,363,239,302,278,285, srow:2336861
1293 chr2 176965098 176965767 wgEncodeRegTfbsClusteredV3 RBBP5 score:196, expCount:1, expNums:8, expScores:196, srow:2336890
1293 chr2 176965223 176965822 wgEncodeRegTfbsClusteredV3 CTBP2 score:132, expCount:1, expNums:348, expScores:132, srow:2336891
1293 chr2 176965245 176965554 wgEncodeRegTfbsClusteredV3 SUZ12 score:107, expCount:1, expNums:358, expScores:107, srow:2336892
1293 chr2 176965224 176965231 tfbsConsSites V$ATF6_01 score:912, zScore:2.34, srow:2868975
1293 chr2 176965244 176965271 tfbsConsSites V$PAX5_01 score:801, zScore:2.27, srow:2868976
1293 chr2 176965255 176965282 tfbsConsSites V$PAX5_01 score:762, zScore:1.68, srow:2868977
1293 chr2 176965258 176965270 tfbsConsSites V$MAZR_01 score:892, zScore:2.18, srow:2868978
1293 chr2 176965259 176965271 tfbsConsSites V$SP1_Q6 score:894, zScore:1.66, srow:2868979
1293 chr2 176965259 176965272 tfbsConsSites V$NFKB_Q6 score:822, zScore:1.64, srow:2868980
1293 chr2 176965261 176965282 tfbsConsSites V$OLF1_01 score:811, zScore:1.95, srow:2868981
1293 chr2 176965262 176965281 tfbsConsSites V$P53_01 score:716, zScore:2.42, srow:2868982
1293 chr2 176965266 176965277 tfbsConsSites V$AP2_Q6 score:899, zScore:2.03, srow:2868983
1293 chr2 176965313 176965326 tfbsConsSites V$CEBP_Q2 score:896, zScore:2.01, srow:2868984
1293 chr2 176965342 176965355 tfbsConsSites V$POU3F2_01 score:809, zScore:2.03, srow:2868985
1293 chr2 176965302 176965302 cosmic COSM571273 srow:689965
1293 chr2 176965305 176965305 cosmic COSM1009842 srow:689966
1293 chr2 176965333 176965333 cosmic COSM1009843 srow:689967
1293 chr2 176965223 176965227 phastConsElements100way lod=14 score:255, srow:4969114
1293 chr2 176965235 176965256 phastConsElements100way lod=186 score:511, srow:4969115
1293 chr2 176965258 176965265 phastConsElements100way lod=116 score:464, srow:4969116
1293 chr2 176965267 176965280 phastConsElements100way lod=114 score:462, srow:4969117
1293 chr2 176965282 176965304 phastConsElements100way lod=276 score:550, srow:4969118
1293 chr2 176965306 176965319 phastConsElements100way lod=160 score:496, srow:4969119
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  • 25 of 28 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
1293 cellmeth_recounts PrEC: 237, LNCaP: 186, DU145: 8
1293 cellmeth_diffreps_PrECvsLNCaP A=1457, B=739, Length=1680, Event=Down, log2FC=-0.98, padj=0
1293 cellmeth_diffreps_PrECvsDU145 A=1460, B=53, Length=1800, Event=Down, log2FC=-4.78, padj=0
1293 cellmeth_diffreps_LNCaPvsDU145 A=799.65, B=49.58, Length=1780, Event=Down, log2FC=-4.01, padj=0
1293 cellexp id=ENSG00000170178, name=HOXD12, PrEC=3, str=4, LNCaP=0, str=0, DU145=0, str=0
1293 tcgaexp gene=HOXD12, entrez=3238, pos=chr2:176964530-176965488(+), B=12, L=2, M=4, H=3