DMR 12939 chr3:126180451-126180650 (200bp)

DMR Stats
Positionchr3:126180451-126180650 (View on UCSC)
Width200bp
Genomic Contextexon
Nearest GenesZXDC (0bp away)
ANODEV p-value0.000449473339065
FrequenciesBenign: 6.0 (85.71%), Low: 0.0 (0.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
12939 ZXDC 20656 uc003eiv.3 chr3 126156444 126194762 - 200 100.0 0.7 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (100), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) 0.0
12939 ZXDC 20656 uc003eix.2 chr3 126169959 126194762 - 200 100.0 1.84 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (100) 0.0
12939 ZXDC 20656 uc010hsh.3 chr3 126156444 126194762 - 200 100.0 0.68 1 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (100), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
12939 chr3 126180491 126180502 tfbsConsSites V$AREB6_03 score:876, zScore:1.69, srow:3539011
12939 chr3 126180554 126180567 tfbsConsSites V$MEIS1AHOXA9_01 score:793, zScore:1.81, srow:3539012
12939 chr3 126180565 126180573 tfbsConsSites V$ZIC3_01 score:927, zScore:1.94, srow:3539013
12939 chr3 126180588 126180593 tfbsConsSites V$AML1_01 score:1000, zScore:1.78, srow:3539014
12939 chr3 126180616 126180636 tfbsConsSites V$PPARG_01 score:776, zScore:2.56, srow:3539015
12939 chr3 126180619 126180633 tfbsConsSites V$HNF4_01_B score:821, zScore:1.89, srow:3539016
12939 chr3 126180635 126180635 cosmic COSM445504 srow:850143
12939 chr3 126180635 126180635 cosmic COSM445505 srow:850144
12939 chr3 126180645 126180645 cosmic COSM347636 srow:850145
12939 chr3 126180645 126180645 cosmic COSM347637 srow:850146
12939 chr3 126180452 126180458 phastConsElements100way lod=20 score:290, srow:6103090
12939 chr3 126180460 126180460 phastConsElements100way lod=14 score:255, srow:6103091
12939 chr3 126180466 126180479 phastConsElements100way lod=31 score:333, srow:6103092
12939 chr3 126180481 126180482 phastConsElements100way lod=24 score:308, srow:6103093
12939 chr3 126180485 126180485 phastConsElements100way lod=14 score:255, srow:6103094
12939 chr3 126180499 126180501 phastConsElements100way lod=21 score:295, srow:6103095
12939 chr3 126180505 126180515 phastConsElements100way lod=44 score:368, srow:6103096
12939 chr3 126180520 126180521 phastConsElements100way lod=20 score:290, srow:6103097
12939 chr3 126180525 126180529 phastConsElements100way lod=40 score:359, srow:6103098
12939 chr3 126180532 126180533 phastConsElements100way lod=30 score:330, srow:6103099
12939 chr3 126180535 126180542 phastConsElements100way lod=27 score:320, srow:6103100
12939 chr3 126180544 126180545 phastConsElements100way lod=18 score:280, srow:6103101
12939 chr3 126180547 126180548 phastConsElements100way lod=24 score:308, srow:6103102
12939 chr3 126180555 126180555 phastConsElements100way lod=14 score:255, srow:6103103
12939 chr3 126180568 126180571 phastConsElements100way lod=17 score:274, srow:6103104
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Omics Overlaps

Dmrid Omic Set Data Plot
12939 cellmeth_recounts PrEC: 13, LNCaP: 0, DU145: 0
12939 cellmeth_diffreps_PrECvsLNCaP A=20, B=0, Length=380, Event=Down, log2FC=-Inf, padj=7.90773854123128e-06
12939 cellmeth_diffreps_PrECvsDU145 A=20, B=0, Length=380, Event=Down, log2FC=-Inf, padj=1.02756470669418e-05
12939 cellexp id=ENSG00000070476, name=ZXDC, PrEC=1616, str=1212, LNCaP=1963, str=1491, DU145=972, str=804
12939 tcgaexp gene=ZXDC, entrez=79364, pos=chr3:126156444-126194762(-), B=2810, L=2844, M=2851, H=3164