DMR 1294 chr2:176997001-176997400 (400bp)
| DMR Stats | |
|---|---|
| Position | chr2:176997001-176997400 (View on UCSC) |
| Width | 400bp |
| Genomic Context | 3' end |
| Nearest Genes | HOXD8 (0bp away) |
| ANODEV p-value | 7.04792208592e-05 |
| Frequencies | Benign: 6.0 (85.71%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1294 | HOXD8 | 17304 | uc002ukn.3 | chr2 | 176994422 | 176997423 | + | 400 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (100) | 100.0 |
| 1294 | HOXD8 | 17304 | uc002uko.3 | chr2 | 176994468 | 176997423 | + | 400 | 100.0 | 0.07 | 0 | 0.0 | E1 (0), I1 (0), E2 (100) | 100.0 |
| 1294 | HOXD8 | 17304 | uc002ukp.3 | chr2 | 176994468 | 176997423 | + | 400 | 100.0 | 0.07 | 0 | 0.0 | E1 (0), I1 (0), E2 (100) | 100.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 1294 | chr2 | 176996961 | 176997855 | wgEncodeRegDnaseClusteredV2 | 45 | score:607, srow:667579 |
| 1294 | chr2 | 176996809 | 176997938 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:688, expCount:6, expNums:6,13,15,25,36,43, expScores:688,362,579,293,318,374, srow:2337043 |
| 1294 | chr2 | 176997269 | 176997286 | tfbsConsSites | V$CMYB_01 | score:805, zScore:1.96, srow:2869542 |
| 1294 | chr2 | 176997001 | 176997042 | phastConsElements100way | lod=82 | score:430, srow:4969687 |
| 1294 | chr2 | 176997048 | 176997059 | phastConsElements100way | lod=40 | score:359, srow:4969688 |
| 1294 | chr2 | 176997069 | 176997076 | phastConsElements100way | lod=13 | score:247, srow:4969689 |
| 1294 | chr2 | 176997112 | 176997126 | phastConsElements100way | lod=64 | score:405, srow:4969690 |
| 1294 | chr2 | 176997133 | 176997136 | phastConsElements100way | lod=15 | score:262, srow:4969691 |
| 1294 | chr2 | 176997180 | 176997184 | phastConsElements100way | lod=18 | score:280, srow:4969692 |
| 1294 | chr2 | 176997197 | 176997218 | phastConsElements100way | lod=102 | score:451, srow:4969693 |
| 1294 | chr2 | 176997230 | 176997233 | phastConsElements100way | lod=14 | score:255, srow:4969694 |
| 1294 | chr2 | 176997243 | 176997262 | phastConsElements100way | lod=58 | score:395, srow:4969695 |
| 1294 | chr2 | 176997267 | 176997309 | phastConsElements100way | lod=142 | score:484, srow:4969696 |
| 1294 | chr2 | 176997326 | 176997349 | phastConsElements100way | lod=67 | score:410, srow:4969697 |
| 1294 | chr2 | 176997351 | 176997358 | phastConsElements100way | lod=28 | score:323, srow:4969698 |
| 1294 | chr2 | 176997364 | 176997441 | phastConsElements100way | lod=205 | score:520, srow:4969699 |
| 1294 | chr2 | 176995558 | 176997557 | cpgShore | — | values(x.gr)[overs$srow, ]:28380 |
- 17 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 1294 | cellmeth_recounts | PrEC: 112, LNCaP: 57, DU145: 6 |  |
| 1294 | cellmeth_diffreps_PrECvsLNCaP | A=171, B=46, Length=560, Event=Down, log2FC=-1.89, padj=0 |  |
| 1294 | cellmeth_diffreps_PrECvsDU145 | A=171, B=5, Length=580, Event=Down, log2FC=-5.1, padj=0 |  |
| 1294 | cellmeth_diffreps_LNCaPvsDU145 | A=48.11, B=4.68, Length=500, Event=Down, log2FC=-3.36, padj=3.97569693380404e-08 |  |
| 1294 | cellexp | id=ENSG00000175879, name=HOXD8, PrEC=522, str=460, LNCaP=3, str=1, DU145=54, str=25 |  |
| 1294 | cellexp | id=ENSG00000237380, name=HOXD-AS2, PrEC=52, str=121, LNCaP=0, str=0, DU145=3, str=2 |  |
| 1294 | tcgameth | site:cg07783843, B=0.75, L=0.85, H=0.82 |  |
| 1294 | tcgameth | site:cg08079908, B=0.7, L=0.85, H=0.8 |  |
| 1294 | tcgaexp | gene=HOXD8, entrez=3234, pos=chr2:176994422-176997423(+), B=532, L=173, M=224, H=370 |  |