DMR 1341 chr2:200333601-200333900 (300bp)
| DMR Stats | |
|---|---|
| Position | chr2:200333601-200333900 (View on UCSC) |
| Width | 300bp |
| Genomic Context | promoter |
| Nearest Genes | SATB2, SATB2-AS1 (0bp away) |
| ANODEV p-value | 0.0022857435846 |
| Frequencies | Benign: 5.0 (71.43%), Low: 6.0 (100.0%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1341 | SATB2 | 17432 | uc002uuz.2 | chr2 | 200134223 | 200335989 | - | 300 | 100.0 | 1.41 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 1341 | SATB2-AS1 | 17434 | uc002uvd.2 | chr2 | 200332821 | 200337481 | + | 300 | 100.0 | 3.05 | 1 | 0.0 | E1 (0), I1 (100), E2 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 1341 | chr2 | 200333641 | 200334215 | wgEncodeRegDnaseClusteredV2 | 35 | score:457, srow:674830 |
| 1341 | chr2 | 200333183 | 200334197 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:601, expCount:5, expNums:13,15,36,40,43, expScores:326,285,393,601,503, srow:2364736 |
| 1341 | chr2 | 200333893 | 200334326 | wgEncodeRegTfbsClusteredV3 | CTCF | score:353, expCount:16, expNums:5,44,137,609,640,644,646,657,659,661,672,674,675,676,682,685, expScores:205,186,222,197,132,155,115,250,353,116,148,161,127,166,121,232, srow:2364737 |
| 1341 | chr2 | 200333521 | 200333685 | phastConsElements100way | lod=954 | score:673, srow:5059491 |
| 1341 | chr2 | 200333705 | 200333708 | phastConsElements100way | lod=15 | score:262, srow:5059492 |
| 1341 | chr2 | 200333797 | 200333799 | phastConsElements100way | lod=15 | score:262, srow:5059493 |
| 1341 | chr2 | 200333688 | 200334172 | cpgIsland | CpG: 41 | length:485, cpgNum:41, gcNum:307, perCpg:16.9, perGc:63.3, obsExp:0.85, srow:15851 |
| 1341 | chr2 | 200331688 | 200333687 | cpgShore | — | values(x.gr)[overs$srow, ]:28541 |
- 8 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 1341 | cellmeth_recounts | PrEC: 39, LNCaP: 82, DU145: 10 |  |
| 1341 | cellmeth_diffreps_PrECvsDU145 | A=132, B=16, Length=1020, Event=Down, log2FC=-3.04, padj=0 |  |
| 1341 | cellmeth_diffreps_LNCaPvsDU145 | A=171.05, B=14.97, Length=1040, Event=Down, log2FC=-3.51, padj=0 |  |
| 1341 | cellexp | id=ENSG00000119042, name=SATB2, PrEC=532, str=839, LNCaP=459, str=371, DU145=678, str=546 |  |
| 1341 | cellexp | id=ENSG00000225953, name=SATB2-AS1, PrEC=15, str=16, LNCaP=22, str=13, DU145=39, str=23 |  |
| 1341 | tcgameth | site:cg08690859, B=0.5, L=0.63, H=0.61 |  |
| 1341 | tcgaexp | gene=SATB2, entrez=23314, pos=chr2:200134223-200335989(-), B=443, L=621, M=596, H=576 |  |
| 1341 | tcgaexp | gene=SATB2-AS1, entrez=150538, pos=chr2:200332821-200337481(+), B=0, L=1, M=1, H=1 |  |