DMR 1342 chr2:200335351-200335650 (300bp)
| DMR Stats | |
|---|---|
| Position | chr2:200335351-200335650 (View on UCSC) |
| Width | 300bp |
| Genomic Context | promoter |
| Nearest Genes | SATB2, SATB2-AS1, AK056625 (0bp away) |
| ANODEV p-value | 0.0200774111219 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1342 | SATB2 | 17432 | uc002uuz.2 | chr2 | 200134223 | 200335989 | - | 300 | 100.0 | 0.96 | 0 | 53.67 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 1342 | SATB2-AS1 | 17434 | uc002uvd.2 | chr2 | 200332821 | 200337481 | + | 300 | 100.0 | 0.96 | 1 | 0.0 | E1 (0), I1 (0), E2 (100) | 0.0 |
| 1342 | AK056625 | 17434 | uc002uve.1 | chr2 | 200334619 | 200341658 | + | 300 | 100.0 | 0.57 | 1 | 0.0 | E1 (100), I1 (0), E2 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 1342 | chr2 | 200335326 | 200335510 | wgEncodeRegDnaseClusteredV2 | 3 | score:399, srow:674832 |
| 1342 | chr2 | 200335606 | 200336015 | wgEncodeRegDnaseClusteredV2 | 9 | score:437, srow:674833 |
| 1342 | chr2 | 200334291 | 200336519 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:863, expCount:8, expNums:6,13,15,19,21,36,40,43, expScores:357,389,269,94,317,349,286,310, srow:2364739 |
| 1342 | chr2 | 200335438 | 200335747 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:112, expCount:1, expNums:358, expScores:112, srow:2364742 |
| 1342 | chr2 | 200335529 | 200335878 | wgEncodeRegTfbsClusteredV3 | CTCF | score:124, expCount:1, expNums:657, expScores:124, srow:2364743 |
| 1342 | chr2 | 200335625 | 200336240 | wgEncodeRegTfbsClusteredV3 | CHD1 | score:197, expCount:1, expNums:4, expScores:197, srow:2364744 |
| 1342 | chr2 | 200335498 | 200336413 | cpgIsland | CpG: 74 | length:916, cpgNum:74, gcNum:582, perCpg:16.2, perGc:63.5, obsExp:0.8, srow:15852 |
| 1342 | chr2 | 200334173 | 200335497 | cpgShore | — | values(x.gr)[overs$srow, ]:28542 |
- 8 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 1342 | cellmeth_recounts | PrEC: 73, LNCaP: 74, DU145: 8 |  |
| 1342 | cellmeth_diffreps_PrECvsLNCaP | A=108, B=56, Length=280, Event=Down, log2FC=-0.95, padj=0.00153158347587091 |  |
| 1342 | cellmeth_diffreps_PrECvsLNCaP | A=5, B=32, Length=320, Event=Up, log2FC=2.68, padj=0.000127968816009697 |  |
| 1342 | cellmeth_diffreps_PrECvsDU145 | A=205, B=12, Length=980, Event=Down, log2FC=-4.09, padj=0 |  |
| 1342 | cellmeth_diffreps_LNCaPvsDU145 | A=130.42, B=11.22, Length=1060, Event=Down, log2FC=-3.54, padj=0 |  |
| 1342 | cellexp | id=ENSG00000119042, name=SATB2, PrEC=532, str=839, LNCaP=459, str=371, DU145=678, str=546 |  |
| 1342 | cellexp | id=ENSG00000225953, name=SATB2-AS1, PrEC=15, str=16, LNCaP=22, str=13, DU145=39, str=23 |  |
| 1342 | tcgameth | site:cg10168149, B=0.54, L=0.7, H=0.7 |  |
| 1342 | tcgaexp | gene=SATB2, entrez=23314, pos=chr2:200134223-200335989(-), B=443, L=621, M=596, H=576 |  |
| 1342 | tcgaexp | gene=SATB2-AS1, entrez=150538, pos=chr2:200332821-200337481(+), B=0, L=1, M=1, H=1 |  |