DMR 13433 chr4:8275901-8276050 (150bp)

DMR Stats
Positionchr4:8275901-8276050 (View on UCSC)
Width150bp
Genomic Contextintron
Nearest GenesHTRA3 (0bp away)
ANODEV p-value0.0444476414348
FrequenciesBenign: 6.0 (85.71%), Low: 2.0 (33.33%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
13433 HTRA3 21373 uc003gkz.3 chr4 8271489 8298200 + 150 100.0 0.24 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
13433 HTRA3 21373 uc003gla.3 chr4 8271489 8308838 + 150 100.0 0.24 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
13433 chr4 8275801 8276015 wgEncodeRegDnaseClusteredV2 2 score:116, srow:871666
13433 chr4 8274092 8276091 cpgShelf — values(x.gr)[overs$srow, ]:29759
  • 2 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
13433 cellmeth_recounts PrEC: 19, LNCaP: 40, DU145: 0
13433 cellmeth_diffreps_PrECvsDU145 A=50, B=1, Length=660, Event=Down, log2FC=-5.64, padj=9.37725123848947e-13
13433 cellmeth_diffreps_LNCaPvsDU145 A=60.94, B=0.94, Length=680, Event=Down, log2FC=-6.03, padj=0
13433 cellexp id=ENSG00000170801, name=HTRA3, PrEC=3, str=7, LNCaP=8, str=7, DU145=110, str=44
13433 tcgaexp gene=UGT2B10, entrez=7365, pos=chr4:393964-69886113(+), B=12, L=1, M=2, H=8
13433 tcgaexp gene=UGT2A3, entrez=79799, pos=chr4:506428-69817509(-), B=1, L=0, M=1, H=1
13433 tcgaexp gene=YTHDC1, entrez=91746, pos=chr4:6027-69215824(-), B=4512, L=3976, M=4109, H=4458
13433 tcgaexp gene=HTRA3, entrez=94031, pos=chr4:8271489-8308838(+), B=1063, L=1865, M=1186, H=1369
13433 tcgaexp gene=DUX4L5, entrez=653545, pos=chr4:72836-191010142(+), B=0, L=0, M=0, H=0