DMR 13495 chr4:30898701-30898900 (200bp)

DMR Stats
Positionchr4:30898701-30898900 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesPCDH7 (0bp away)
ANODEV p-value0.000757166095324
FrequenciesBenign: 5.0 (71.43%), Low: 0.0 (0.0%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
13495 PCDH7 21495 uc011bxx.2 chr4 30722037 31148423 + 200 100.0 5.36 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) 0.0
13495 PCDH7 21495 uc021xnd.1 chr4 30722037 31148423 + 200 100.0 0.45 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
13495 chr4 30898721 30898955 wgEncodeRegDnaseClusteredV2 2 score:140, srow:879293
13495 chr4 30898850 30898863 tfbsConsSites V$CEBPA_01 score:878, zScore:1.71, srow:3737775
13495 chr4 30898878 30898895 tfbsConsSites V$FOXJ2_01 score:886, zScore:1.8, srow:3737776
13495 chr4 30898881 30898895 tfbsConsSites V$HNF3B_01 score:895, zScore:2.35, srow:3737777
  • 4 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
13495 cellmeth_recounts PrEC: 1, LNCaP: 3, DU145: 1
13495 cellexp id=ENSG00000169851, name=PCDH7, PrEC=7422, str=9585, LNCaP=0, str=11, DU145=0, str=6
13495 tcgaexp gene=PCDH7, entrez=5099, pos=chr4:30722030-31148423(+), B=3961, L=1245, M=1476, H=1048
13495 tcgaexp gene=UGT2B10, entrez=7365, pos=chr4:393964-69886113(+), B=12, L=1, M=2, H=8
13495 tcgaexp gene=UGT2A3, entrez=79799, pos=chr4:506428-69817509(-), B=1, L=0, M=1, H=1
13495 tcgaexp gene=YTHDC1, entrez=91746, pos=chr4:6027-69215824(-), B=4512, L=3976, M=4109, H=4458
13495 tcgaexp gene=DUX4L5, entrez=653545, pos=chr4:72836-191010142(+), B=0, L=0, M=0, H=0