DMR 1359 chr2:206980901-206981050 (150bp)
| DMR Stats | |
|---|---|
| Position | chr2:206980901-206981050 (View on UCSC) |
| Width | 150bp |
| Genomic Context | promoter |
| Nearest Genes | GCSHP3 (0bp away) |
| ANODEV p-value | 0.000878858833576 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 0.0 (0.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1359 | GCSHP3 | 17494 | uc002vbc.2 | chr2 | 206980297 | 206981296 | - | 150 | 100.0 | 1.87 | 1 | 100.0 | E1 (100) | 100.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 1359 | chr2 | 206980977 | 206981406 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:317, expCount:2, expNums:61,62, expScores:245,317, srow:2375491 |
| 1359 | chr2 | 206981034 | 206981349 | wgEncodeRegTfbsClusteredV3 | GABPA | score:185, expCount:1, expNums:180, expScores:185, srow:2375492 |
| 1359 | chr2 | 206980868 | 206980956 | phastConsElements100way | lod=442 | score:596, srow:5095568 |
| 1359 | chr2 | 206980958 | 206981052 | phastConsElements100way | lod=527 | score:614, srow:5095569 |
- 4 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 1359 | cellmeth_recounts | PrEC: 0, LNCaP: 0, DU145: 3 |  |
| 1359 | cellmeth_diffreps_PrECvsLNCaP | A=191, B=17, Length=500, Event=Down, log2FC=-3.49, padj=0 |  |
| 1359 | cellmeth_diffreps_PrECvsDU145 | A=191, B=8, Length=500, Event=Down, log2FC=-4.58, padj=0 |  |
| 1359 | cellexp | id=ENSG00000023228, name=NDUFS1, PrEC=7213, str=4637, LNCaP=6928, str=10783, DU145=5346, str=6405 |  |
| 1359 | cellexp | id=ENSG00000231955, name=AC007383.4, PrEC=52, str=181, LNCaP=205, str=119, DU145=92, str=78 |  |
| 1359 | cellexp | id=ENSG00000237580, name=GCSHP3, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |