DMR 13715 chr4:110739751-110739900 (150bp)

DMR Stats
Positionchr4:110739751-110739900 (View on UCSC)
Width150bp
Genomic Context3' end
Nearest GenesGAR1 (0bp away)
ANODEV p-value0.00124278271003
FrequenciesBenign: 6.0 (85.71%), Low: 1.0 (16.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
13715 GAR1 21953 uc003hzt.3 chr4 110736666 110745893 + 150 100.0 0.02 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
13715 GAR1 21953 uc003hzu.3 chr4 110736666 110745893 + 150 100.0 0.02 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
13715 GAR1 21953 uc010imh.1 chr4 110736984 110740743 + 150 100.0 0.02 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0) 100.0
13715 GAR1 21953 uc010imi.3 chr4 110737309 110745893 + 150 100.0 0.02 0 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
  • 4 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
13715 chr4 110739129 110741128 cpgShelf — values(x.gr)[overs$srow, ]:30430
  • 1 features

Omics Overlaps

Dmrid Omic Set Data Plot
13715 cellmeth_recounts PrEC: 2, LNCaP: 3, DU145: 8
13715 cellexp id=ENSG00000109534, name=GAR1, PrEC=1840, str=1276, LNCaP=1224, str=1838, DU145=1180, str=1768
13715 tcgaexp gene=GAR1, entrez=54433, pos=chr4:110736666-110745893(+), B=679, L=885, M=871, H=860
13715 tcgaexp gene=DUX4L5, entrez=653545, pos=chr4:72836-191010142(+), B=0, L=0, M=0, H=0