DMR 138 chr1:17018701-17018850 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:17018701-17018850 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | ESPNP (0bp away) |
| ANODEV p-value | 0.00297182943 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 138 | ESPNP | 315 | uc001azn.1 | chr1 | 17017713 | 17046652 | - | 150 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (100), E11 (0) | 8.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 138 | chr1 | 17018526 | 17018850 | wgEncodeRegDnaseClusteredV2 | 5 | score:297, srow:13111 |
| 138 | chr1 | 17017896 | 17020924 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:797, expCount:9, expNums:6,15,17,19,21,36,38,40,43, expScores:275,295,278,109,490,226,380,213,274, srow:44833 |
| 138 | chr1 | 17018581 | 17018796 | wgEncodeRegTfbsClusteredV3 | CTCF | score:185, expCount:1, expNums:137, expScores:185, srow:44834 |
| 138 | chr1 | 17018823 | 17018832 | tfbsConsSites | V$CDPCR1_01 | score:856, zScore:2.07, srow:34859 |
| 138 | chr1 | 17018824 | 17018841 | tfbsConsSites | V$SRF_01 | score:721, zScore:1.65, srow:34860 |
| 138 | chr1 | 17018837 | 17018866 | tfbsConsSites | V$HOX13_01 | score:756, zScore:2.59, srow:34861 |
| 138 | chr1 | 17018773 | 17018792 | phastConsElements100way | lod=166 | score:500, srow:64579 |
| 138 | chr1 | 17018794 | 17018822 | phastConsElements100way | lod=343 | score:571, srow:64580 |
| 138 | chr1 | 17018824 | 17018828 | phastConsElements100way | lod=72 | score:417, srow:64581 |
| 138 | chr1 | 17018830 | 17018849 | phastConsElements100way | lod=192 | score:514, srow:64582 |
| 138 | chr1 | 17018684 | 17020959 | cpgIsland | CpG: 231 | length:2276, cpgNum:231, gcNum:1564, perCpg:20.3, perGc:68.7, obsExp:0.86, srow:517 |
- 11 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 138 | cellmeth_recounts | PrEC: 120, LNCaP: 241, DU145: 10 |  |
| 138 | cellmeth_diffreps_PrECvsLNCaP | A=147, B=728, Length=1140, Event=Up, log2FC=2.31, padj=0 |  |
| 138 | cellmeth_diffreps_PrECvsDU145 | A=206, B=16, Length=560, Event=Down, log2FC=-3.69, padj=0 |  |
| 138 | cellmeth_diffreps_LNCaPvsDU145 | A=840.27, B=33.67, Length=1320, Event=Down, log2FC=-4.64, padj=0 |  |
| 138 | cellexp | id=ENSG00000268869, name=ESPNP, PrEC=3, str=0, LNCaP=63, str=10, DU145=8, str=7 |  |
| 138 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 138 | tcgaexp | gene=ESPNP, entrez=284729, pos=chr1:17017713-17046652(-), B=1, L=1, M=1, H=1 |  |
| 138 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |