DMR 1383 chr2:218621251-218621400 (150bp)
| DMR Stats | |
|---|---|
| Position | chr2:218621251-218621400 (View on UCSC) |
| Width | 150bp |
| Genomic Context | promoter |
| Nearest Genes | DIRC3 (0bp away) |
| ANODEV p-value | 0.0216682462807 |
| Frequencies | Benign: 6.0 (85.71%), Low: 6.0 (100.0%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1383 | DIRC3 | 17575 | uc002vgo.3 | chr2 | 218148746 | 218621316 | - | 66 | 44.0 | 0.5 | 1 | 100.0 | E1 (44), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 1383 | chr2 | 218621261 | 218621555 | wgEncodeRegDnaseClusteredV2 | 109 | score:1000, srow:682447 |
| 1383 | chr2 | 218620932 | 218621455 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:204, expCount:1, expNums:362, expScores:204, srow:2390386 |
| 1383 | chr2 | 218621124 | 218621499 | wgEncodeRegTfbsClusteredV3 | TCF7L2 | score:137, expCount:1, expNums:363, expScores:137, srow:2390387 |
| 1383 | chr2 | 218621143 | 218621472 | wgEncodeRegTfbsClusteredV3 | MAX | score:177, expCount:1, expNums:352, expScores:177, srow:2390388 |
| 1383 | chr2 | 218621152 | 218621671 | wgEncodeRegTfbsClusteredV3 | SIN3A | score:185, expCount:1, expNums:357, expScores:185, srow:2390389 |
| 1383 | chr2 | 218621156 | 218621499 | wgEncodeRegTfbsClusteredV3 | MXI1 | score:204, expCount:1, expNums:353, expScores:204, srow:2390390 |
| 1383 | chr2 | 218621191 | 218621466 | wgEncodeRegTfbsClusteredV3 | USF2 | score:516, expCount:1, expNums:360, expScores:516, srow:2390391 |
| 1383 | chr2 | 218621197 | 218621610 | wgEncodeRegTfbsClusteredV3 | GABPA | score:247, expCount:2, expNums:140,180, expScores:247,173, srow:2390392 |
| 1383 | chr2 | 218621204 | 218621443 | wgEncodeRegTfbsClusteredV3 | USF1 | score:1000, expCount:2, expNums:161,265, expScores:1000,191, srow:2390393 |
| 1383 | chr2 | 218621242 | 218621617 | wgEncodeRegTfbsClusteredV3 | TBP | score:146, expCount:1, expNums:359, expScores:146, srow:2390394 |
| 1383 | chr2 | 218621247 | 218621867 | wgEncodeRegTfbsClusteredV3 | CTCF | score:1000, expCount:98, expNums:0,2,5,9,12,14,16,18,20,24,35,37,39,42,44,48,49,72,137,174,213,262,267,290,463,493,595,597,598,601,603,604,605,606,607,609,612,615,618,621,627,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,647,648,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,670,671,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686,687,688,689, expScores:1000,876,908,430,471,368,804,796,1000,802,497,1000,509,805,191,497,433,127,1000,866,452,739,239,742,1000,687,1000,1000,1000,1000,1000,1000,1000,703,1000,568,334,490,430,780,1000,1000,1000,1000,1000,1000,1000,906,1000,1000,1000,1000,1000,1000,1000,1000,364,1000,1000,1000,1000,1000,820,1000,846,1000,1000,1000,883,1000,1000,1000,1000,1000,455,1000,787,1000,132,1000,984,1000,1000,1000,1000,1000,1000,853,1000,605,1000,1000,641,1000,1000,1000,985,761, srow:2390395 |
| 1383 | chr2 | 218621261 | 218621596 | wgEncodeRegTfbsClusteredV3 | YY1 | score:203, expCount:1, expNums:162, expScores:203, srow:2390396 |
| 1383 | chr2 | 218621266 | 218621555 | wgEncodeRegTfbsClusteredV3 | ZNF143 | score:301, expCount:1, expNums:361, expScores:301, srow:2390397 |
| 1383 | chr2 | 218621304 | 218621589 | wgEncodeRegTfbsClusteredV3 | SMC3 | score:203, expCount:2, expNums:313,535, expScores:203,186, srow:2390398 |
| 1383 | chr2 | 218621311 | 218621581 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:1000, expCount:12, expNums:108,149,193,231,264,280,310,355,405,448,466,529, expScores:409,1000,1000,498,1000,240,178,1000,196,431,1000,130, srow:2390399 |
| 1383 | chr2 | 218621363 | 218621532 | wgEncodeRegTfbsClusteredV3 | CTCFL | score:198, expCount:1, expNums:214, expScores:198, srow:2390400 |
| 1383 | chr2 | 218620847 | 218621607 | oreganno | OREG0015184 | id:OREG0015184, srow:13331 |
| 1383 | chr2 | 218621280 | 218621498 | cpgIsland | CpG: 23 | length:219, cpgNum:23, gcNum:164, perCpg:21, perGc:74.9, obsExp:0.77, srow:15936 |
| 1383 | chr2 | 218619280 | 218621279 | cpgShore | — | values(x.gr)[overs$srow, ]:28706 |
- 19 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 1383 | cellmeth_recounts | PrEC: 57, LNCaP: 1, DU145: 1 |  |
| 1383 | cellmeth_diffreps_PrECvsLNCaP | A=88, B=1, Length=500, Event=Down, log2FC=-6.46, padj=0 |  |
| 1383 | cellmeth_diffreps_PrECvsDU145 | A=88, B=1, Length=480, Event=Down, log2FC=-6.46, padj=0 |  |
| 1383 | cellexp | id=ENSG00000231672, name=DIRC3, PrEC=0, str=7, LNCaP=1, str=1, DU145=1, str=1 |  |
| 1383 | tcgameth | site:cg12309703, B=0.69, L=0.82, H=0.76 |  |
| 1383 | tcgameth | site:cg22277636, B=0.22, L=0.08, H=0.17 |  |
| 1383 | tcgaexp | gene=DIRC3, entrez=729582, pos=chr2:218148746-218621316(-), B=26, L=16, M=11, H=9 |  |