DMR 1389 chr2:220330451-220330800 (350bp)
| DMR Stats | |
|---|---|
| Position | chr2:220330451-220330800 (View on UCSC) |
| Width | 350bp |
| Genomic Context | 3' end |
| Nearest Genes | SPEG (0bp away) |
| ANODEV p-value | 0.0140666710145 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1389 | SPEG | 17637 | uc002vlm.3 | chr2 | 220301997 | 220331584 | + | 350 | 100.0 | 0.32 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (93.71), E11 (6.29) | 61.71 |
| 1389 | SPEG | 17637 | uc002vln.1 | chr2 | 220308396 | 220331583 | + | 350 | 100.0 | 0.32 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (100) | 62.0 |
| 1389 | SPEG | 17637 | uc002vlp.1 | chr2 | 220315392 | 220331583 | + | 350 | 100.0 | 0.32 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (100) | 62.0 |
| 1389 | SPEG | 17637 | uc002vlq.3 | chr2 | 220325534 | 220331584 | + | 350 | 100.0 | 0.75 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (93.71), E5 (6.29) | 61.71 |
| 1389 | SPEG | 17637 | uc010fwg.3 | chr2 | 220299700 | 220358354 | + | 350 | 100.0 | 0.32 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (100), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0), I31 (0), E32 (0), I32 (0), E33 (0), I33 (0), E34 (0), I34 (0), E35 (0), I35 (0), E36 (0), I36 (0), E37 (0), I37 (0), E38 (0), I38 (0), E39 (0), I39 (0), E40 (0), I40 (0), E41 (0) | 0.0 |
| 1389 | SPEG | 17637 | uc010fwh.2 | chr2 | 220306773 | 220331584 | + | 350 | 100.0 | 0.32 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (93.71), E12 (6.29) | 61.71 |
- 6 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 1389 | chr2 | 220330316 | 220330911 | wgEncodeRegTfbsClusteredV3 | NFATC1 | score:494, expCount:1, expNums:96, expScores:494, srow:2396275 |
| 1389 | chr2 | 220330451 | 220330760 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:133, expCount:1, expNums:358, expScores:133, srow:2396276 |
| 1389 | chr2 | 220330480 | 220330778 | wgEncodeRegTfbsClusteredV3 | BCL3 | score:697, expCount:1, expNums:83, expScores:697, srow:2396277 |
| 1389 | chr2 | 220330490 | 220330709 | wgEncodeRegTfbsClusteredV3 | PBX3 | score:248, expCount:1, expNums:102, expScores:248, srow:2396278 |
| 1389 | chr2 | 220330542 | 220330633 | wgEncodeRegTfbsClusteredV3 | TCF3 | score:378, expCount:1, expNums:117, expScores:378, srow:2396279 |
| 1389 | chr2 | 220330751 | 220330761 | tfbsConsSites | V$AP1_Q2 | score:915, zScore:2.04, srow:2980615 |
| 1389 | chr2 | 220330773 | 220330785 | tfbsConsSites | V$AREB6_01 | score:904, zScore:2.07, srow:2980616 |
| 1389 | chr2 | 220330784 | 220330799 | tfbsConsSites | V$ARP1_01 | score:835, zScore:2.6, srow:2980617 |
| 1389 | chr2 | 220330790 | 220330811 | tfbsConsSites | V$HEN1_02 | score:795, zScore:2.3, srow:2980618 |
| 1389 | chr2 | 220330791 | 220330810 | tfbsConsSites | V$MYCMAX_03 | score:794, zScore:1.88, srow:2980619 |
| 1389 | chr2 | 220330791 | 220330810 | tfbsConsSites | V$YY1_02 | score:788, zScore:2.1, srow:2980620 |
| 1389 | chr2 | 220330793 | 220330807 | tfbsConsSites | V$E47_01 | score:945, zScore:3.03, srow:2980621 |
| 1389 | chr2 | 220330793 | 220330808 | tfbsConsSites | V$ARNT_01 | score:839, zScore:1.74, srow:2980622 |
| 1389 | chr2 | 220330793 | 220330808 | tfbsConsSites | V$GRE_C | score:811, zScore:1.72, srow:2980623 |
| 1389 | chr2 | 220330795 | 220330806 | tfbsConsSites | V$LMO2COM_01 | score:921, zScore:1.73, srow:2980624 |
| 1389 | chr2 | 220330795 | 220330806 | tfbsConsSites | V$MYOD_01 | score:898, zScore:1.88, srow:2980625 |
| 1389 | chr2 | 220330496 | 220330517 | phastConsElements100way | lod=66 | score:408, srow:5155385 |
| 1389 | chr2 | 220330727 | 220330895 | phastConsElements100way | lod=1180 | score:694, srow:5155386 |
- 18 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 1389 | cellmeth_recounts | PrEC: 434, LNCaP: 102, DU145: 42 |  |
| 1389 | cellmeth_diffreps_PrECvsLNCaP | A=672, B=83, Length=760, Event=Down, log2FC=-3.02, padj=0 |  |
| 1389 | cellmeth_diffreps_PrECvsDU145 | A=672, B=36, Length=760, Event=Down, log2FC=-4.22, padj=0 |  |
| 1389 | cellmeth_diffreps_LNCaPvsDU145 | A=81.25, B=29, Length=360, Event=Down, log2FC=-1.49, padj=8.1615081387348e-05 |  |
| 1389 | cellexp | id=ENSG00000072195, name=SPEG, PrEC=2526, str=4287, LNCaP=58, str=15, DU145=657, str=231 |  |
| 1389 | tcgaexp | gene=SPEG, entrez=10290, pos=chr2:220299700-220358354(+), B=3035, L=1907, M=1294, H=976 |  |