DMR 13967 chr5:169201-169400 (200bp)

DMR Stats
Positionchr5:169201-169400 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesPLEKHG4B (0bp away)
ANODEV p-value0.00338046600096
FrequenciesBenign: 5.0 (71.43%), Low: 1.0 (16.67%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
13967 PLEKHG4B 22370 uc003jak.2 chr5 140373 190087 + 200 100.0 0.05 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (100), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
13967 chr5 169387 169796 wgEncodeRegTfbsClusteredV3 EZH2 score:228, expCount:1, expNums:25, expScores:228, srow:3166018
13967 chr5 166659 169578 cpgShore — values(x.gr)[overs$srow, ]:36843
  • 2 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
13967 cellmeth_recounts PrEC: 16, LNCaP: 4, DU145: 19
13967 cellmeth_diffreps_PrECvsLNCaP A=103, B=12, Length=660, Event=Down, log2FC=-3.1, padj=0
13967 cellmeth_diffreps_PrECvsDU145 A=0, B=25, Length=320, Event=Up, log2FC=Inf, padj=3.5894758062688e-07
13967 cellmeth_diffreps_PrECvsDU145 A=102, B=17, Length=560, Event=Down, log2FC=-2.58, padj=3.65648343852673e-14
13967 cellexp id=ENSG00000153404, name=PLEKHG4B, PrEC=7, str=87, LNCaP=23, str=10, DU145=2099, str=2093
13967 tcgaexp gene=PLEKHG4B, entrez=153478, pos=chr5:140373-190087(+), B=404, L=190, M=316, H=356