DMR 1497 chr2:240981151-240981300 (150bp)
| DMR Stats | |
|---|---|
| Position | chr2:240981151-240981300 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | PRR21 (0bp away) |
| ANODEV p-value | 0.00116623650135 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 0.0 (0.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1497 | PRR21 | 17818 | uc010zod.2 | chr2 | 240981230 | 240982399 | - | 71 | 47.33 | 0.07 | 0 | 0.0 | E1 (47.33) | 100.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 1497 | chr2 | 240980766 | 240981155 | wgEncodeRegDnaseClusteredV2 | 4 | score:217, srow:696837 |
| 1497 | chr2 | 240981267 | 240981267 | cosmic | COSM574487 | srow:735007 |
| 1497 | chr2 | 240981267 | 240981267 | cosmic | COSM574488 | srow:735008 |
| 1497 | chr2 | 240981149 | 240981158 | phastConsElements100way | lod=17 | score:274, srow:5219579 |
| 1497 | chr2 | 240981171 | 240981178 | phastConsElements100way | lod=12 | score:240, srow:5219580 |
| 1497 | chr2 | 240979402 | 240981401 | cpgShore | — | values(x.gr)[overs$srow, ]:29162 |
- 6 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 1497 | cellmeth_recounts | PrEC: 1, LNCaP: 5, DU145: 8 |  |
| 1497 | cellmeth_diffreps_PrECvsLNCaP | A=41, B=4, Length=380, Event=Down, log2FC=-3.36, padj=1.87192828654056e-07 |  |
| 1497 | cellmeth_diffreps_PrECvsDU145 | A=41, B=5, Length=380, Event=Down, log2FC=-3.04, padj=1.22975329686545e-06 |  |
| 1497 | cellexp | id=ENSG00000221961, name=PRR21, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 1497 | tcgaexp | gene=PRR21, entrez=643905, pos=chr2:240981230-240982399(-), B=0, L=0, M=0, H=0 |  |