DMR 15314 chr7:203201-203350 (150bp)
| DMR Stats | |
|---|---|
| Position | chr7:203201-203350 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | FAM20C (0bp away) |
| ANODEV p-value | 0.00198453760603 |
| Frequencies | Benign: 2.0 (28.57%), Low: 1.0 (16.67%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15314 | FAM20C | 26571 | uc003sip.3 | chr7 | 192969 | 300740 | + | 150 | 100.0 | 9.91 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 15314 | chr7 | 202452 | 204451 | cpgShelf | — | values(x.gr)[overs$srow, ]:36131 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 15314 | cellmeth_recounts | PrEC: 15, LNCaP: 3, DU145: 1 |  |
| 15314 | cellmeth_diffreps_PrECvsLNCaP | A=42, B=3, Length=560, Event=Down, log2FC=-3.81, padj=1.65246002114059e-08 |  |
| 15314 | cellmeth_diffreps_PrECvsDU145 | A=40, B=2, Length=540, Event=Down, log2FC=-4.32, padj=9.27312367715555e-09 |  |
| 15314 | cellexp | id=ENSG00000177706, name=FAM20C, PrEC=1889, str=4484, LNCaP=78, str=29, DU145=1910, str=1427 |  |
| 15314 | tcgaexp | gene=FAM20C, entrez=56975, pos=chr7:192969-300740(+), B=2431, L=3211, M=2965, H=2717 |  |