DMR 15340 chr7:1125601-1125800 (200bp)
| DMR Stats | |
|---|---|
| Position | chr7:1125601-1125800 (View on UCSC) |
| Width | 200bp |
| Genomic Context | promoter |
| Nearest Genes | C7orf50, GPER (0bp away) |
| ANODEV p-value | 0.018747813906 |
| Frequencies | Benign: 5.0 (71.43%), Low: 2.0 (33.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15340 | C7orf50 | 26584 | uc003sju.2 | chr7 | 1036623 | 1177893 | - | 200 | 100.0 | 7.41 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 15340 | GPER | 26588 | uc010ksd.1 | chr7 | 1121844 | 1133451 | + | 200 | 100.0 | 10.6 | 0 | 0.0 | E1 (0), I1 (100), E2 (0) | 0.0 |
| 15340 | C7orf50 | 26584 | uc011jvt.1 | chr7 | 1036623 | 1177893 | - | 200 | 100.0 | 6.62 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 15340 | C7orf50 | 26584 | uc011jvu.1 | chr7 | 1036623 | 1177893 | - | 200 | 100.0 | 10.22 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 15340 | chr7 | 1125501 | 1127415 | wgEncodeRegDnaseClusteredV2 | 124 | score:1000, srow:1069974 |
| 15340 | chr7 | 1124579 | 1126578 | cpgShore | — | values(x.gr)[overs$srow, ]:43045 |
- 2 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 15340 | cellmeth_recounts | PrEC: 19, LNCaP: 18, DU145: 1 |  |
| 15340 | cellmeth_diffreps_PrECvsDU145 | A=31, B=1, Length=460, Event=Down, log2FC=-4.95, padj=2.42525854690887e-07 |  |
| 15340 | cellmeth_diffreps_LNCaPvsDU145 | A=11.76, B=0, Length=220, Event=Down, log2FC=-Inf, padj=0.00547907730955432 |  |
| 15340 | cellexp | id=ENSG00000146540, name=C7orf50, PrEC=5877, str=1413, LNCaP=5276, str=4050, DU145=2730, str=2866 |  |
| 15340 | cellexp | id=ENSG00000164850, name=GPER1, PrEC=13, str=14, LNCaP=213, str=396, DU145=25, str=28 |  |
| 15340 | tcgaexp | gene=GPER, entrez=2852, pos=chr7:1121844-1133451(+), B=710, L=441, M=474, H=319 |  |
| 15340 | tcgaexp | gene=C7orf50, entrez=84310, pos=chr7:1036623-1177893(-), B=3436, L=3952, M=3544, H=2938 |  |