DMR 15797 chr7:99707751-99707950 (200bp)
| DMR Stats | |
|---|---|
| Position | chr7:99707751-99707950 (View on UCSC) |
| Width | 200bp |
| Genomic Context | 3' end |
| Nearest Genes | AP4M1, TAF6 (0bp away) |
| ANODEV p-value | 0.0170806873528 |
| Frequencies | Benign: 5.0 (71.43%), Low: 2.0 (33.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15797 | AP4M1 | 27415 | uc003utd.3 | chr7 | 99699130 | 99707942 | + | 192 | 96.0 | 0.07 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (31.5), E16 (64.5) | 100.0 |
| 15797 | TAF6 | 27416 | uc003utg.3 | chr7 | 99704693 | 99711577 | - | 200 | 100.0 | 0.1 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (27), E8 (37.5), I8 (36), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 15797 | TAF6 | 27416 | uc003uth.3 | chr7 | 99704693 | 99712140 | - | 200 | 100.0 | 0.1 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (27), E10 (37.5), I10 (36), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 15797 | TAF6 | 27416 | uc003uti.3 | chr7 | 99704693 | 99716995 | - | 200 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (27), E11 (37.5), I11 (36), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
| 15797 | TAF6 | 27416 | uc003utk.3 | chr7 | 99704693 | 99717021 | - | 200 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (27), E11 (37.5), I11 (36), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
| 15797 | TAF6 | 27416 | uc003utm.3 | chr7 | 99704693 | 99716995 | - | 200 | 100.0 | 0.81 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (27), E11 (37.5), I11 (36), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
| 15797 | TAF6 | 27416 | uc011kji.2 | chr7 | 99704693 | 99717481 | - | 200 | 100.0 | 0.5 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (27), E11 (37.5), I11 (36), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
- 7 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 15797 | chr7 | 99707726 | 99707935 | wgEncodeRegDnaseClusteredV2 | 3 | score:234, srow:1110099 |
| 15797 | chr7 | 99707317 | 99707801 | wgEncodeRegTfbsClusteredV3 | CTCF | score:1000, expCount:50, expNums:0,5,9,12,24,37,48,49,174,213,262,493,595,597,598,603,605,609,612,615,621,627,628,629,630,631,635,636,638,639,645,647,658,659,662,663,665,667,669,672,673,674,676,677,679,680,681,685,687,688, expScores:220,246,176,268,142,101,125,96,335,129,143,192,513,153,607,221,126,142,269,166,331,989,1000,1000,796,1000,169,152,213,137,224,240,127,322,229,195,202,436,171,107,223,150,216,151,125,207,117,218,225,316, srow:3822713 |
| 15797 | chr7 | 99707847 | 99707859 | tfbsConsSites | V$ZID_01 | score:884, zScore:2.34, srow:4905371 |
| 15797 | chr7 | 99707825 | 99707825 | cosmic | COSM1228442 | srow:1098115 |
| 15797 | chr7 | 99707866 | 99707866 | cosmic | COSM453699 | srow:1098116 |
| 15797 | chr7 | 99707868 | 99707868 | cosmic | COSM1267378 | srow:1098117 |
| 15797 | chr7 | 99707818 | 99707837 | phastConsElements100way | lod=161 | score:496, srow:8494693 |
| 15797 | chr7 | 99707839 | 99707858 | phastConsElements100way | lod=213 | score:524, srow:8494694 |
| 15797 | chr7 | 99707860 | 99707864 | phastConsElements100way | lod=51 | score:383, srow:8494695 |
| 15797 | chr7 | 99707866 | 99707867 | phastConsElements100way | lod=33 | score:340, srow:8494696 |
| 15797 | chr7 | 99707869 | 99707873 | phastConsElements100way | lod=75 | score:421, srow:8494697 |
| 15797 | chr7 | 99707875 | 99707876 | phastConsElements100way | lod=35 | score:345, srow:8494698 |
| 15797 | chr7 | 99707878 | 99707885 | phastConsElements100way | lod=90 | score:439, srow:8494699 |
| 15797 | chr7 | 99707887 | 99707900 | phastConsElements100way | lod=150 | score:489, srow:8494700 |
- 14 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 15797 | cellmeth_recounts | PrEC: 19, LNCaP: 5, DU145: 0 |  |
| 15797 | cellmeth_diffreps_PrECvsLNCaP | A=39, B=4, Length=520, Event=Down, log2FC=-3.29, padj=6.0485972066321e-07 |  |
| 15797 | cellmeth_diffreps_PrECvsDU145 | A=35, B=0, Length=400, Event=Down, log2FC=-Inf, padj=4.02008751083549e-10 |  |
| 15797 | cellexp | id=ENSG00000106290, name=TAF6, PrEC=2155, str=853, LNCaP=2149, str=1814, DU145=2956, str=2937 |  |
| 15797 | cellexp | id=ENSG00000221838, name=AP4M1, PrEC=816, str=864, LNCaP=1277, str=758, DU145=678, str=550 |  |
| 15797 | tcgaexp | gene=TAF6, entrez=6878, pos=chr7:99704693-99717481(-), B=3489, L=2925, M=2872, H=2870 |  |
| 15797 | tcgaexp | gene=AP4M1, entrez=9179, pos=chr7:99699130-99707942(+), B=1003, L=1116, M=1189, H=1243 |  |