DMR 16219 chr8:10623501-10623650 (150bp)

DMR Stats
Positionchr8:10623501-10623650 (View on UCSC)
Width150bp
Genomic Context3' end
Nearest GenesPINX1, SOX7 (0bp away)
ANODEV p-value0.0332022085687
FrequenciesBenign: 6.0 (85.71%), Low: 1.0 (16.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
16219 PINX1 28169 uc003wth.2 chr8 10622884 10697299 - 150 100.0 0.76 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (100), E7 (0) 100.0
16219 PINX1 28169 uc003wti.2 chr8 10622884 10697299 - 150 100.0 0.76 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0) 100.0
16219 SOX7 28169 uc011kwz.2 chr8 10581278 10697299 - 150 100.0 0.76 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
16219 chr8 10623286 10623835 wgEncodeRegDnaseClusteredV2 9 score:225, srow:1141906
  • 1 features

Omics Overlaps

Dmrid Omic Set Data Plot
16219 cellmeth_recounts PrEC: 5, LNCaP: 8, DU145: 4
16219 cellexp id=ENSG00000171056, name=SOX7, PrEC=1817, str=995, LNCaP=10, str=1, DU145=34, str=28
16219 cellexp id=ENSG00000248896, name=CTD-2135J3.3, PrEC=16, str=9, LNCaP=5, str=5, DU145=4, str=4
16219 cellexp id=ENSG00000254093, name=PINX1, PrEC=957, str=471, LNCaP=435, str=565, DU145=389, str=513
16219 cellexp id=ENSG00000258724, name=SOX7, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
16219 tcgaexp gene=PINX1, entrez=54984, pos=chr8:10622884-10697299(-), B=227, L=229, M=233, H=217
16219 tcgaexp gene=SOX7, entrez=83595, pos=chr8:10581278-10697299(-), B=1001, L=459, M=433, H=365