DMR 16228 chr8:11302351-11302500 (150bp)
| DMR Stats | |
|---|---|
| Position | chr8:11302351-11302500 (View on UCSC) |
| Width | 150bp |
| Genomic Context | promoter |
| Nearest Genes | FAM167A (0bp away) |
| ANODEV p-value | 0.00734828675674 |
| Frequencies | Benign: 5.0 (71.43%), Low: 2.0 (33.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16228 | FAM167A | 28183 | uc003wtw.2 | chr8 | 11278973 | 11324276 | - | 150 | 100.0 | 1.06 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) | 0.0 |
| 16228 | FAM167A | 28183 | uc010lry.1 | chr8 | 11278973 | 11302878 | - | 150 | 100.0 | 0.84 | 0 | 81.33 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 16228 | chr8 | 11302126 | 11302395 | wgEncodeRegDnaseClusteredV2 | 3 | score:385, srow:1142410 |
| 16228 | chr8 | 11302390 | 11302404 | tfbsConsSites | V$ISRE_01 | score:814, zScore:2.27, srow:5042525 |
| 16228 | chr8 | 11302395 | 11302412 | tfbsConsSites | V$IRF7_01 | score:802, zScore:1.75, srow:5042526 |
| 16228 | chr8 | 11302404 | 11302412 | phastConsElements100way | lod=15 | score:262, srow:8717143 |
- 4 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 16228 | cellmeth_recounts | PrEC: 5, LNCaP: 0, DU145: 4 |  |
| 16228 | cellmeth_diffreps_PrECvsLNCaP | A=119, B=8, Length=760, Event=Down, log2FC=-3.89, padj=0 |  |
| 16228 | cellexp | id=ENSG00000154319, name=FAM167A, PrEC=1039, str=670, LNCaP=78, str=7, DU145=4796, str=3268 |  |
| 16228 | tcgaexp | gene=FAM167A, entrez=83648, pos=chr8:11278973-11324276(-), B=998, L=204, M=159, H=139 |  |