DMR 164 chr1:25254051-25254200 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:25254051-25254200 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | RUNX3 (0bp away) |
| ANODEV p-value | 0.00752744188319 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 164 | RUNX3 | 454 | uc001bjq.3 | chr1 | 25226002 | 25256770 | - | 150 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (90.67), I2 (9.33), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 164 | RUNX3 | 454 | uc001bjr.3 | chr1 | 25226002 | 25291501 | - | 150 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (90.67), I3 (9.33), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 164 | RUNX3 | 454 | uc009vrj.3 | chr1 | 25226002 | 25291475 | - | 150 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (90.67), I4 (9.33), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
| 164 | RUNX3 | 454 | uc010oen.2 | chr1 | 25226002 | 25256770 | - | 150 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (90.67), I2 (9.33), E3 (0), I3 (0), E4 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 164 | chr1 | 25254126 | 25254330 | wgEncodeRegDnaseClusteredV2 | 2 | score:325, srow:20272 |
| 164 | chr1 | 25251212 | 25257503 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:25, expNums:62,78,104,105,123,124,130,131,163,283,306,307,308,326,328,330,332,334,336,338,340,362,577,585,602, expScores:201,275,377,370,253,272,286,283,269,130,291,229,199,395,1000,161,283,183,267,229,222,100,193,220,271, srow:68146 |
| 164 | chr1 | 25254069 | 25254075 | tfbsConsSites | V$AP2REP_01 | score:978, zScore:1.99, srow:53029 |
| 164 | chr1 | 25254078 | 25254101 | tfbsConsSites | V$STAT5A_02 | score:764, zScore:2.03, srow:53030 |
| 164 | chr1 | 25254104 | 25254117 | tfbsConsSites | V$MYCMAX_01 | score:830, zScore:2.21, srow:53031 |
| 164 | chr1 | 25254133 | 25254146 | tfbsConsSites | V$CEBPB_02 | score:867, zScore:2.07, srow:53032 |
| 164 | chr1 | 25254133 | 25254146 | tfbsConsSites | V$CEBP_Q2 | score:904, zScore:2.17, srow:53033 |
| 164 | chr1 | 25254160 | 25254172 | tfbsConsSites | V$OCT1_03 | score:883, zScore:1.96, srow:53034 |
| 164 | chr1 | 25254195 | 25254209 | tfbsConsSites | V$TAXCREB_02 | score:757, zScore:1.89, srow:53035 |
| 164 | chr1 | 25254197 | 25254210 | tfbsConsSites | V$NFKB_Q6 | score:875, zScore:2.5, srow:53036 |
| 164 | chr1 | 25254076 | 25254076 | cosmic | COSM1502090 | srow:15597 |
| 164 | chr1 | 25254076 | 25254076 | cosmic | COSM1502091 | srow:15598 |
| 164 | chr1 | 25254077 | 25254077 | cosmic | COSM1264686 | srow:15599 |
| 164 | chr1 | 25254077 | 25254077 | cosmic | COSM1264687 | srow:15600 |
| 164 | chr1 | 25254126 | 25254126 | cosmic | COSM183898 | srow:15601 |
| 164 | chr1 | 25254143 | 25254143 | cosmic | COSM1341238 | srow:15602 |
| 164 | chr1 | 25254143 | 25254143 | cosmic | COSM1341239 | srow:15603 |
| 164 | chr1 | 25254150 | 25254151 | cosmic | COSM143524 | srow:15604 |
| 164 | chr1 | 25254164 | 25254164 | cosmic | COSM1264684 | srow:15605 |
| 164 | chr1 | 25254164 | 25254164 | cosmic | COSM1264685 | srow:15606 |
| 164 | chr1 | 25254174 | 25254174 | cosmic | COSM1194877 | srow:15607 |
| 164 | chr1 | 25254174 | 25254174 | cosmic | COSM1194878 | srow:15608 |
| 164 | chr1 | 25254060 | 25254089 | phastConsElements100way | lod=264 | score:545, srow:100280 |
| 164 | chr1 | 25254091 | 25254125 | phastConsElements100way | lod=442 | score:596, srow:100281 |
| 164 | chr1 | 25254127 | 25254128 | phastConsElements100way | lod=35 | score:345, srow:100282 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 164 | cellmeth_recounts | PrEC: 162, LNCaP: 341, DU145: 9 |  |
| 164 | cellmeth_diffreps_PrECvsLNCaP | A=54, B=114, Length=240, Event=Up, log2FC=1.08, padj=0.000132644752478371 |  |
| 164 | cellmeth_diffreps_PrECvsDU145 | A=243, B=9, Length=520, Event=Down, log2FC=-4.75, padj=0 |  |
| 164 | cellmeth_diffreps_LNCaPvsDU145 | A=293.99, B=8.42, Length=560, Event=Down, log2FC=-5.13, padj=0 |  |
| 164 | cellexp | id=ENSG00000020633, name=RUNX3, PrEC=325, str=37, LNCaP=13, str=4, DU145=1814, str=1653 |  |
| 164 | tcgameth | site:cg03769939, B=0.72, L=0.83, H=0.81 |  |
| 164 | tcgameth | site:cg05656688, B=0.71, L=0.78, H=0.76 |  |
| 164 | tcgameth | site:cg11336061, B=0.81, L=0.89, H=0.86 |  |
| 164 | tcgaexp | gene=RUNX3, entrez=864, pos=chr1:25226002-25291612(-), B=382, L=368, M=346, H=404 |  |
| 164 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |