DMR 16483 chr8:56852901-56853100 (200bp)

DMR Stats
Positionchr8:56852901-56853100 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesLYN (0bp away)
ANODEV p-value0.000494858171131
FrequenciesBenign: 5.0 (71.43%), Low: 0.0 (0.0%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
16483 LYN 28493 uc003xsk.4 chr8 56792386 56925006 + 200 100.0 0.82 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) 0.0
16483 LYN 28493 uc003xsl.4 chr8 56792386 56925006 + 200 100.0 0.81 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
16483 chr8 56851842 56853068 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:17, expNums:32,104,105,123,124,131,228,229,328,340,520,521,523,525,563,583,622, expScores:187,387,739,274,269,346,272,692,290,306,310,262,186,191,330,451,216, srow:3992460
16483 chr8 56851943 56852956 wgEncodeRegTfbsClusteredV3 CCNT2 score:147, expCount:1, expNums:476, expScores:133, srow:3992471
16483 chr8 56852340 56852943 wgEncodeRegTfbsClusteredV3 GATA1 score:207, expCount:1, expNums:582, expScores:207, srow:3992496
16483 chr8 56852469 56852941 wgEncodeRegTfbsClusteredV3 MAX score:1000, expCount:2, expNums:223,511, expScores:364,590, srow:3992506
16483 chr8 56852470 56852925 wgEncodeRegTfbsClusteredV3 JUND score:626, expCount:2, expNums:507,594, expScores:351,626, srow:3992507
16483 chr8 56852672 56852935 wgEncodeRegTfbsClusteredV3 USF1 score:281, expCount:1, expNums:243, expScores:281, srow:3992533
16483 chr8 56852682 56852917 wgEncodeRegTfbsClusteredV3 ATF3 score:153, expCount:1, expNums:208, expScores:153, srow:3992534
  • 7 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
16483 cellmeth_recounts PrEC: 3, LNCaP: 1, DU145: 10
16483 cellexp id=ENSG00000254087, name=LYN, PrEC=2072, str=3219, LNCaP=1123, str=2357, DU145=6881, str=6957
16483 tcgaexp gene=LYN, entrez=4067, pos=chr8:56792386-56925006(+), B=1520, L=1403, M=1517, H=1638