DMR 165 chr1:25262151-25262350 (200bp)

DMR Stats
Positionchr1:25262151-25262350 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesRUNX3 (0bp away)
ANODEV p-value0.00774246820322
FrequenciesBenign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 0.0 (0.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
165 RUNX3 454 uc001bjr.3 chr1 25226002 25291501 - 200 100.0 0.07 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
165 RUNX3 454 uc009vrj.3 chr1 25226002 25291475 - 200 100.0 0.04 0 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
165 RUNX3 454 uc009vrk.3 chr1 25255176 25291501 - 200 100.0 0.04 0 0.0 E1 (0), I1 (100), E2 (0) 0.0
165 RUNX3 454 uc009vrl.1 chr1 25256078 25291612 - 200 100.0 0.04 0 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0) 0.0
  • 4 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
165 chr1 25262101 25262495 wgEncodeRegDnaseClusteredV2 12 score:761, srow:20284
165 chr1 25260659 25263031 wgEncodeRegTfbsClusteredV3 POLR2A score:477, expCount:5, expNums:104,105,130,131,602, expScores:410,357,455,477,144, srow:68268
165 chr1 25261996 25262511 wgEncodeRegTfbsClusteredV3 CEBPB score:219, expCount:1, expNums:85, expScores:219, srow:68278
165 chr1 25262011 25262530 wgEncodeRegTfbsClusteredV3 ATF2 score:244, expCount:1, expNums:79, expScores:244, srow:68279
165 chr1 25262040 25262669 wgEncodeRegTfbsClusteredV3 STAT5A score:315, expCount:1, expNums:114, expScores:315, srow:68280
165 chr1 25262061 25262744 wgEncodeRegTfbsClusteredV3 PML score:272, expCount:1, expNums:103, expScores:272, srow:68281
165 chr1 25262120 25262439 wgEncodeRegTfbsClusteredV3 POU2F2 score:306, expCount:1, expNums:106, expScores:306, srow:68282
165 chr1 25262126 25262530 wgEncodeRegTfbsClusteredV3 RELA score:436, expCount:4, expNums:282,300,325,327, expScores:190,436,422,125, srow:68283
165 chr1 25262128 25262547 wgEncodeRegTfbsClusteredV3 BCLAF1 score:188, expCount:1, expNums:84, expScores:188, srow:68284
165 chr1 25262141 25262444 wgEncodeRegTfbsClusteredV3 TCF3 score:261, expCount:1, expNums:117, expScores:261, srow:68285
165 chr1 25262146 25262427 wgEncodeRegTfbsClusteredV3 RUNX3 score:402, expCount:1, expNums:109, expScores:402, srow:68286
165 chr1 25262149 25262428 wgEncodeRegTfbsClusteredV3 BCL11A score:189, expCount:1, expNums:82, expScores:189, srow:68287
165 chr1 25262163 25262422 wgEncodeRegTfbsClusteredV3 TCF12 score:223, expCount:1, expNums:116, expScores:223, srow:68288
165 chr1 25262165 25262393 wgEncodeRegTfbsClusteredV3 NFIC score:470, expCount:1, expNums:97, expScores:470, srow:68289
165 chr1 25262177 25262492 wgEncodeRegTfbsClusteredV3 EBF1 score:967, expCount:2, expNums:86,292, expScores:309,967, srow:68290
165 chr1 25262183 25262301 wgEncodeRegTfbsClusteredV3 BATF score:472, expCount:1, expNums:81, expScores:472, srow:68291
165 chr1 25262199 25262488 wgEncodeRegTfbsClusteredV3 MEF2A score:161, expCount:1, expNums:93, expScores:161, srow:68292
165 chr1 25262207 25262536 wgEncodeRegTfbsClusteredV3 BHLHE40 score:241, expCount:1, expNums:284, expScores:241, srow:68293
165 chr1 25262208 25262577 wgEncodeRegTfbsClusteredV3 EP300 score:155, expCount:1, expNums:304, expScores:155, srow:68294
165 chr1 25262229 25262664 wgEncodeRegTfbsClusteredV3 MAZ score:308, expCount:1, expNums:297, expScores:308, srow:68295
165 chr1 25261006 25263005 cpgShelf — values(x.gr)[overs$srow, ]:927
  • 21 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
165 cellmeth_recounts PrEC: 4, LNCaP: 4, DU145: 3
165 cellexp id=ENSG00000020633, name=RUNX3, PrEC=325, str=37, LNCaP=13, str=4, DU145=1814, str=1653
165 tcgaexp gene=RUNX3, entrez=864, pos=chr1:25226002-25291612(-), B=382, L=368, M=346, H=404
165 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305