DMR 1671 chr3:55519451-55519700 (250bp)

DMR Stats
Positionchr3:55519451-55519700 (View on UCSC)
Width250bp
Genomic Contextintron
Nearest GenesWNT5A (0bp away)
ANODEV p-value0.000958800723423
FrequenciesBenign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 3.0 (33.33 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
1671 WNT5A 20281 uc003dhn.4 chr3 55499743 55521670 - 250 100.0 0.11 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
1671 WNT5A 20281 uc010hmx.4 chr3 55499743 55521670 - 250 100.0 0.19 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
1671 chr3 55519206 55520770 wgEncodeRegDnaseClusteredV2 120 score:1000, srow:809667
1671 chr3 55519111 55519600 wgEncodeRegTfbsClusteredV3 TAF1 score:156, expCount:2, expNums:157,169, expScores:156,114, srow:2808644
1671 chr3 55519116 55519511 wgEncodeRegTfbsClusteredV3 MAX score:151, expCount:1, expNums:395, expScores:151, srow:2808645
1671 chr3 55519117 55519603 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:95, expNums:0,2,5,9,12,14,16,18,20,24,35,37,39,42,44,48,49,137,174,213,262,267,290,463,493,595,597,598,601,603,604,605,606,607,609,612,615,618,621,627,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,647,648,650,651,652,653,654,655,656,657,658,659,660,661,662,664,665,666,667,668,669,671,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686,687,688,689, expScores:114,489,550,267,152,307,421,241,313,193,151,570,205,284,642,301,293,759,704,414,680,338,1000,1000,376,1000,930,1000,881,1000,1000,1000,701,1000,388,721,164,229,395,496,1000,1000,826,787,1000,482,212,1000,873,854,1000,936,998,348,1000,484,1000,1000,1000,965,1000,701,758,879,667,760,1000,701,718,1000,737,331,1000,497,280,821,1000,834,1000,894,859,800,1000,752,414,318,130,882,851,342,782,857,915,543,279, srow:2808646
1671 chr3 55519133 55519496 wgEncodeRegTfbsClusteredV3 ELF1 score:157, expCount:1, expNums:88, expScores:157, srow:2808647
1671 chr3 55519133 55519648 wgEncodeRegTfbsClusteredV3 TFAP2C score:156, expCount:1, expNums:370, expScores:156, srow:2808648
1671 chr3 55519152 55519467 wgEncodeRegTfbsClusteredV3 YY1 score:301, expCount:2, expNums:119,133, expScores:301,169, srow:2808649
1671 chr3 55519155 55519470 wgEncodeRegTfbsClusteredV3 ZNF143 score:505, expCount:2, expNums:322,361, expScores:505,160, srow:2808650
1671 chr3 55519158 55519527 wgEncodeRegTfbsClusteredV3 CHD2 score:137, expCount:1, expNums:380, expScores:137, srow:2808651
1671 chr3 55519160 55519483 wgEncodeRegTfbsClusteredV3 REST score:141, expCount:1, expNums:274, expScores:141, srow:2808652
1671 chr3 55519173 55519459 wgEncodeRegTfbsClusteredV3 SMC3 score:557, expCount:3, expNums:313,408,535, expScores:557,552,99, srow:2808653
1671 chr3 55519174 55519460 wgEncodeRegTfbsClusteredV3 RAD21 score:1000, expCount:11, expNums:108,149,193,231,264,280,310,355,405,448,466, expScores:1000,1000,1000,461,1000,149,555,1000,305,353,1000, srow:2808654
1671 chr3 55519183 55519852 wgEncodeRegTfbsClusteredV3 RBBP5 score:233, expCount:1, expNums:8, expScores:233, srow:2808655
1671 chr3 55519204 55519483 wgEncodeRegTfbsClusteredV3 PAX5 score:118, expCount:1, expNums:129, expScores:118, srow:2808656
1671 chr3 55519226 55519529 wgEncodeRegTfbsClusteredV3 FOXP2 score:123, expCount:1, expNums:251, expScores:123, srow:2808657
1671 chr3 55519237 55519489 wgEncodeRegTfbsClusteredV3 POLR2A score:476, expCount:1, expNums:168, expScores:476, srow:2808658
1671 chr3 55519254 55520043 wgEncodeRegTfbsClusteredV3 EZH2 score:335, expCount:1, expNums:13, expScores:335, srow:2808659
1671 chr3 55519256 55519579 wgEncodeRegTfbsClusteredV3 BACH1 score:172, expCount:1, expNums:341, expScores:172, srow:2808660
1671 chr3 55519368 55519737 wgEncodeRegTfbsClusteredV3 RUNX3 score:262, expCount:1, expNums:109, expScores:262, srow:2808661
1671 chr3 55519005 55519796 oreganno OREG0015626 id:OREG0015626, srow:15940
1671 chr3 55519657 55519663 phastConsElements100way lod=16 score:268, srow:5851958
1671 chr3 55519090 55519623 cpgIsland CpG: 41 length:534, cpgNum:41, gcNum:346, perCpg:15.4, perGc:64.8, obsExp:0.74, srow:18616
1671 chr3 55519624 55520226 cpgShore — values(x.gr)[overs$srow, ]:33615
  • 23 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
1671 cellmeth_recounts PrEC: 47, LNCaP: 64, DU145: 1
1671 cellmeth_diffreps_PrECvsDU145 A=71, B=1, Length=440, Event=Down, log2FC=-6.15, padj=0
1671 cellmeth_diffreps_LNCaPvsDU145 A=56.66, B=0.94, Length=480, Event=Down, log2FC=-5.92, padj=0
1671 cellexp id=ENSG00000114251, name=WNT5A, PrEC=1438, str=9043, LNCaP=236, str=227, DU145=394, str=270
1671 tcgameth site:cg26712080, B=0.21, L=0.53, H=0.3
1671 tcgaexp gene=WNT5A, entrez=7474, pos=chr3:55499743-55521670(-), B=1903, L=779, M=1504, H=4353