DMR 1672 chr3:55520101-55520300 (200bp)

DMR Stats
Positionchr3:55520101-55520300 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesWNT5A (0bp away)
ANODEV p-value0.0122490825791
FrequenciesBenign: 1.0 (14.29%), Low: 4.0 (66.67%), High: 2.0 (22.22 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
1672 WNT5A 20281 uc003dhn.4 chr3 55499743 55521670 - 200 100.0 0.14 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
1672 WNT5A 20281 uc010hmx.4 chr3 55499743 55521670 - 200 100.0 0.19 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
1672 chr3 55519206 55520770 wgEncodeRegDnaseClusteredV2 120 score:1000, srow:809667
1672 chr3 55519926 55520301 wgEncodeRegTfbsClusteredV3 TBP score:147, expCount:1, expNums:412, expScores:147, srow:2808662
1672 chr3 55520069 55520728 wgEncodeRegTfbsClusteredV3 SMARCB1 score:180, expCount:1, expNums:391, expScores:180, srow:2808663
1672 chr3 55520103 55520498 wgEncodeRegTfbsClusteredV3 MAX score:222, expCount:1, expNums:395, expScores:222, srow:2808664
1672 chr3 55520120 55520489 wgEncodeRegTfbsClusteredV3 CHD2 score:204, expCount:1, expNums:380, expScores:204, srow:2808665
1672 chr3 55520139 55521163 wgEncodeRegTfbsClusteredV3 POLR2A score:828, expCount:4, expNums:168,402,563,613, expScores:828,373,199,160, srow:2808666
1672 chr3 55520156 55520544 wgEncodeRegTfbsClusteredV3 TAF1 score:137, expCount:2, expNums:169,261, expScores:133,137, srow:2808667
1672 chr3 55520171 55520550 wgEncodeRegTfbsClusteredV3 E2F1 score:201, expCount:1, expNums:390, expScores:201, srow:2808668
1672 chr3 55520174 55520637 wgEncodeRegTfbsClusteredV3 MAZ score:243, expCount:1, expNums:396, expScores:243, srow:2808669
1672 chr3 55520178 55520421 wgEncodeRegTfbsClusteredV3 REST score:120, expCount:1, expNums:167, expScores:120, srow:2808670
1672 chr3 55520184 55520443 wgEncodeRegTfbsClusteredV3 SMC3 score:194, expCount:1, expNums:408, expScores:194, srow:2808671
1672 chr3 55520092 55520110 tfbsConsSites V$ER_Q6 score:806, zScore:2.18, srow:3377790
1672 chr3 55520126 55520137 tfbsConsSites V$CDC5_01 score:871, zScore:2.71, srow:3377791
1672 chr3 55520154 55520183 tfbsConsSites V$PAX4_04 score:727, zScore:1.72, srow:3377792
1672 chr3 55520277 55520306 tfbsConsSites V$HOX13_01 score:744, zScore:2.38, srow:3377793
1672 chr3 55520288 55520301 tfbsConsSites V$P300_01 score:867, zScore:2.11, srow:3377794
1672 chr3 55520295 55520302 tfbsConsSites V$MZF1_01 score:970, zScore:1.8, srow:3377795
1672 chr3 55520295 55520304 tfbsConsSites V$SP1_01 score:973, zScore:2.33, srow:3377796
1672 chr3 55520062 55520178 phastConsElements100way lod=548 score:618, srow:5851964
1672 chr3 55520186 55520193 phastConsElements100way lod=13 score:247, srow:5851965
1672 chr3 55520198 55520222 phastConsElements100way lod=67 score:410, srow:5851966
1672 chr3 55520240 55520244 phastConsElements100way lod=21 score:295, srow:5851967
1672 chr3 55520270 55520279 phastConsElements100way lod=16 score:268, srow:5851968
1672 chr3 55520294 55520305 phastConsElements100way lod=39 score:356, srow:5851969
1672 chr3 55520227 55522344 cpgIsland CpG: 176 length:2118, cpgNum:176, gcNum:1303, perCpg:16.6, perGc:61.5, obsExp:0.88, srow:18617
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  • 25 of 26 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
1672 cellmeth_recounts PrEC: 9, LNCaP: 24, DU145: 0
1672 cellmeth_diffreps_PrECvsDU145 A=14, B=0, Length=340, Event=Down, log2FC=-Inf, padj=0.000506195974236337
1672 cellmeth_diffreps_LNCaPvsDU145 A=35.28, B=0, Length=520, Event=Down, log2FC=-Inf, padj=1.07356601665038e-09
1672 cellexp id=ENSG00000114251, name=WNT5A, PrEC=1438, str=9043, LNCaP=236, str=227, DU145=394, str=270
1672 tcgaexp gene=WNT5A, entrez=7474, pos=chr3:55499743-55521670(-), B=1903, L=779, M=1504, H=4353