DMR 176 chr1:27340051-27340250 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:27340051-27340250 (View on UCSC) |
| Width | 200bp |
| Genomic Context | promoter |
| Nearest Genes | BC016143 (0bp away) |
| ANODEV p-value | 0.00240314348922 |
| Frequencies | Benign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 0.0 (0.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 176 | BC016143 | 494 | uc021ojq.1 | chr1 | 27145537 | 27392034 | + | 200 | 100.0 | 0.05 | 1 | 0.0 | E1 (0), I1 (100), E2 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 176 | chr1 | 27339804 | 27340079 | wgEncodeRegTfbsClusteredV3 | CEBPB | score:211, expCount:1, expNums:477, expScores:211, srow:77956 |
| 176 | chr1 | 27339900 | 27340722 | wgEncodeRegTfbsClusteredV3 | PHF8 | score:282, expCount:1, expNums:30, expScores:207, srow:77957 |
| 176 | chr1 | 27339442 | 27341441 | cpgShore | — | values(x.gr)[overs$srow, ]:1278 |
- 3 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 176 | cellmeth_recounts | PrEC: 8, LNCaP: 11, DU145: 1 |  |
| 176 | cellmeth_diffreps_LNCaPvsDU145 | A=11.76, B=0, Length=200, Event=Down, log2FC=-Inf, padj=0.00547907730955432 |  |
| 176 | cellmeth_diffreps_LNCaPvsDU145 | A=32.07, B=2.81, Length=380, Event=Down, log2FC=-3.51, padj=1.953548787359e-05 |  |
| 176 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |