DMR 18488 chr11:43920751-43920900 (150bp)
| DMR Stats | |
|---|---|
| Position | chr11:43920751-43920900 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | ALKBH3, SEC14L1P1 (0bp away) |
| ANODEV p-value | 0.0154391536216 |
| Frequencies | Benign: 5.0 (71.43%), Low: 1.0 (16.67%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18488 | ALKBH3 | 4558 | uc001mxs.2 | chr11 | 43902357 | 43941825 | + | 150 | 100.0 | 0.17 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 18488 | ALKBH3 | 4558 | uc001mxt.2 | chr11 | 43902357 | 43941825 | + | 150 | 100.0 | 0.17 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 18488 | ALKBH3 | 4558 | uc009ykp.2 | chr11 | 43902357 | 43941825 | + | 150 | 100.0 | 0.23 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 18488 | SEC14L1P1 | 4559 | uc010rfk.3 | chr11 | 43918853 | 43921424 | + | 150 | 100.0 | 0.23 | 0 | 0.0 | E1 (100) | 100.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 18488 | chr11 | 43920886 | 43921055 | wgEncodeRegDnaseClusteredV2 | 2 | score:228, srow:203468 |
| 18488 | chr11 | 43920689 | 43920797 | phastConsElements100way | lod=519 | score:612, srow:1473392 |
| 18488 | chr11 | 43920802 | 43920833 | phastConsElements100way | lod=223 | score:529, srow:1473393 |
| 18488 | chr11 | 43920835 | 43920854 | phastConsElements100way | lod=134 | score:478, srow:1473394 |
| 18488 | chr11 | 43920856 | 43920953 | phastConsElements100way | lod=479 | score:604, srow:1473395 |
- 5 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 18488 | cellmeth_recounts | PrEC: 2, LNCaP: 6, DU145: 5 |  |
| 18488 | cellexp | id=ENSG00000166199, name=ALKBH3, PrEC=1506, str=839, LNCaP=1492, str=1771, DU145=769, str=1148 |  |
| 18488 | cellexp | id=ENSG00000213693, name=SEC14L1P1, PrEC=28, str=41, LNCaP=98, str=85, DU145=45, str=85 |  |
| 18488 | tcgaexp | gene=ALKBH3, entrez=221120, pos=chr11:43902357-43941825(+), B=1150, L=1302, M=1217, H=1163 |  |
| 18488 | tcgaexp | gene=SEC14L1P1, entrez=729799, pos=chr11:43918853-43921424(+), B=39, L=43, M=43, H=60 |  |