DMR 1852 chr3:127794301-127794700 (400bp)

DMR Stats
Positionchr3:127794301-127794700 (View on UCSC)
Width400bp
Genomic Contextintron
Nearest GenesRUVBL1 (0bp away)
ANODEV p-value0.0005962987354
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 1.0 (11.11 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
1852 RUVBL1 20677 uc003ekf.3 chr3 127783628 127872757 - 400 100.0 0.75 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (100), E10 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
1852 chr3 127793766 127794395 wgEncodeRegDnaseClusteredV2 28 score:498, srow:833987
1852 chr3 127794426 127795295 wgEncodeRegDnaseClusteredV2 118 score:1000, srow:833988
1852 chr3 127793832 127794968 wgEncodeRegTfbsClusteredV3 POLR2A score:608, expCount:14, expNums:61,62,78,147,163,192,206,207,229,256,336,403,524,583, expScores:608,312,363,431,266,230,330,278,450,146,236,252,177,434, srow:2879781
1852 chr3 127794005 127794522 wgEncodeRegTfbsClusteredV3 STAT3 score:341, expCount:4, expNums:566,567,568,569, expScores:152,125,132,161, srow:2879782
1852 chr3 127794076 127794699 wgEncodeRegTfbsClusteredV3 PHF8 score:328, expCount:1, expNums:30, expScores:328, srow:2879783
1852 chr3 127794260 127794869 wgEncodeRegTfbsClusteredV3 SP4 score:269, expCount:1, expNums:155, expScores:269, srow:2879784
1852 chr3 127794283 127794926 wgEncodeRegTfbsClusteredV3 SMARCA4 score:171, expCount:1, expNums:475, expScores:171, srow:2879785
1852 chr3 127794290 127794785 wgEncodeRegTfbsClusteredV3 HMGN3 score:163, expCount:1, expNums:501, expScores:163, srow:2879786
1852 chr3 127794297 127794700 wgEncodeRegTfbsClusteredV3 RELA score:194, expCount:1, expNums:329, expScores:194, srow:2879787
1852 chr3 127794316 127794835 wgEncodeRegTfbsClusteredV3 SIN3A score:270, expCount:1, expNums:357, expScores:270, srow:2879788
1852 chr3 127794333 127794778 wgEncodeRegTfbsClusteredV3 CHD2 score:450, expCount:3, expNums:288,345,479, expScores:269,450,263, srow:2879789
1852 chr3 127794334 127794789 wgEncodeRegTfbsClusteredV3 CCNT2 score:353, expCount:1, expNums:476, expScores:353, srow:2879790
1852 chr3 127794341 127794700 wgEncodeRegTfbsClusteredV3 IRF1 score:346, expCount:1, expNums:506, expScores:346, srow:2879791
1852 chr3 127794355 127794790 wgEncodeRegTfbsClusteredV3 MAZ score:638, expCount:2, expNums:297,512, expScores:297,638, srow:2879792
1852 chr3 127794363 127794726 wgEncodeRegTfbsClusteredV3 ELF1 score:235, expCount:2, expNums:88,217, expScores:235,168, srow:2879793
1852 chr3 127794363 127794718 wgEncodeRegTfbsClusteredV3 TAF7 score:146, expCount:1, expNums:158, expScores:146, srow:2879794
1852 chr3 127794368 127794720 wgEncodeRegTfbsClusteredV3 SP1 score:332, expCount:2, expNums:112,153, expScores:151,332, srow:2879795
1852 chr3 127794369 127794758 wgEncodeRegTfbsClusteredV3 ETS1 score:188, expCount:1, expNums:218, expScores:188, srow:2879796
1852 chr3 127794379 127794818 wgEncodeRegTfbsClusteredV3 CBX3 score:322, expCount:1, expNums:211, expScores:322, srow:2879797
1852 chr3 127794386 127794825 wgEncodeRegTfbsClusteredV3 MYC score:587, expCount:7, expNums:347,485,487,488,489,617,620, expScores:192,209,587,225,441,128,153, srow:2879798
1852 chr3 127794390 127794686 wgEncodeRegTfbsClusteredV3 EGR1 score:853, expCount:3, expNums:87,138,216, expScores:385,244,853, srow:2879799
1852 chr3 127794395 127794755 wgEncodeRegTfbsClusteredV3 E2F4 score:177, expCount:2, expNums:494,562, expScores:177,144, srow:2879800
1852 chr3 127794409 127794812 wgEncodeRegTfbsClusteredV3 ZBTB7A score:195, expCount:1, expNums:247, expScores:195, srow:2879801
1852 chr3 127794414 127794769 wgEncodeRegTfbsClusteredV3 MAX score:786, expCount:2, expNums:223,511, expScores:786,310, srow:2879802
1852 chr3 127794415 127794930 wgEncodeRegTfbsClusteredV3 PML score:225, expCount:1, expNums:227, expScores:225, srow:2879803
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  • 25 of 54 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
1852 cellmeth_recounts PrEC: 1, LNCaP: 1123, DU145: 5
1852 cellmeth_diffreps_PrECvsLNCaP A=648, B=5551, Length=2500, Event=Up, log2FC=3.1, padj=0
1852 cellmeth_diffreps_LNCaPvsDU145 A=5934.27, B=37.42, Length=2460, Event=Down, log2FC=-7.31, padj=0
1852 cellexp id=ENSG00000175792, name=RUVBL1, PrEC=10054, str=3078, LNCaP=8691, str=9700, DU145=5854, str=5602
1852 cellexp id=ENSG00000239608, name=RUVBL1-AS1, PrEC=0, str=2, LNCaP=9, str=2, DU145=3, str=3
1852 tcgaexp gene=RUVBL1, entrez=8607, pos=chr3:127783628-127872757(-), B=1809, L=2384, M=2527, H=3035