DMR 18621 chr11:64608001-64608150 (150bp)
| DMR Stats | |
|---|---|
| Position | chr11:64608001-64608150 (View on UCSC) |
| Width | 150bp |
| Genomic Context | exon |
| Nearest Genes | CDC42BPG (0bp away) |
| ANODEV p-value | 0.0134750979833 |
| Frequencies | Benign: 5.0 (71.43%), Low: 0.0 (0.0%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18621 | CDC42BPG | 5074 | uc001obs.4 | chr11 | 64591662 | 64612041 | - | 150 | 100.0 | 0.21 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (20.67), E4 (64), I4 (16), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0), I31 (0), E32 (0), I32 (0), E33 (0), I33 (0), E34 (0), I34 (0), E35 (0), I35 (0), E36 (0), I36 (0), E37 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 18621 | chr11 | 64607926 | 64608275 | wgEncodeRegDnaseClusteredV2 | 9 | score:613, srow:212190 |
| 18621 | chr11 | 64608022 | 64608045 | tfbsConsSites | V$STAT5A_02 | score:793, zScore:2.54, srow:901922 |
| 18621 | chr11 | 64608056 | 64608083 | tfbsConsSites | V$PAX5_02 | score:762, zScore:1.67, srow:901923 |
| 18621 | chr11 | 64608057 | 64608075 | tfbsConsSites | V$AHRARNT_02 | score:775, zScore:1.75, srow:901924 |
| 18621 | chr11 | 64608062 | 64608074 | tfbsConsSites | V$TCF11_01 | score:910, zScore:1.66, srow:901925 |
| 18621 | chr11 | 64608064 | 64608081 | tfbsConsSites | V$CMYB_01 | score:819, zScore:2.22, srow:901926 |
| 18621 | chr11 | 64608103 | 64608111 | tfbsConsSites | V$STAT_01 | score:903, zScore:1.69, srow:901927 |
| 18621 | chr11 | 64608107 | 64608115 | tfbsConsSites | V$AREB6_04 | score:981, zScore:2.22, srow:901928 |
| 18621 | chr11 | 64608029 | 64608488 | oreganno | OREG0004018 | id:OREG0004018, srow:4303 |
| 18621 | chr11 | 64608020 | 64608036 | phastConsElements100way | lod=114 | score:462, srow:1544140 |
| 18621 | chr11 | 64608038 | 64608048 | phastConsElements100way | lod=146 | score:487, srow:1544141 |
| 18621 | chr11 | 64608050 | 64608057 | phastConsElements100way | lod=93 | score:442, srow:1544142 |
| 18621 | chr11 | 64608059 | 64608059 | phastConsElements100way | lod=17 | score:274, srow:1544143 |
| 18621 | chr11 | 64608062 | 64608081 | phastConsElements100way | lod=183 | score:509, srow:1544144 |
| 18621 | chr11 | 64608083 | 64608090 | phastConsElements100way | lod=81 | score:429, srow:1544145 |
| 18621 | chr11 | 64608092 | 64608096 | phastConsElements100way | lod=41 | score:361, srow:1544146 |
| 18621 | chr11 | 64608098 | 64608123 | phastConsElements100way | lod=244 | score:538, srow:1544147 |
| 18621 | chr11 | 64607715 | 64609714 | cpgShelf | — | values(x.gr)[overs$srow, ]:6806 |
- 18 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 18621 | cellmeth_recounts | PrEC: 33, LNCaP: 6, DU145: 3 |  |
| 18621 | cellmeth_diffreps_PrECvsLNCaP | A=105, B=17, Length=700, Event=Down, log2FC=-2.63, padj=0 |  |
| 18621 | cellmeth_diffreps_PrECvsDU145 | A=105, B=3, Length=800, Event=Down, log2FC=-5.13, padj=0 |  |
| 18621 | cellexp | id=ENSG00000171219, name=CDC42BPG, PrEC=2905, str=1530, LNCaP=3146, str=2429, DU145=1503, str=1329 |  |
| 18621 | tcgaexp | gene=CDC42BPG, entrez=55561, pos=chr11:64591662-64612041(-), B=1581, L=1342, M=1261, H=1241 |  |