DMR 1898 chr3:150666251-150666400 (150bp)
| DMR Stats | |
|---|---|
| Position | chr3:150666251-150666400 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | CLRN1, CLRN1-AS1 (0bp away) |
| ANODEV p-value | 0.02245889797 |
| Frequencies | Benign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 3.0 (33.33 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1898 | CLRN1 | 20874 | uc003eyk.1 | chr3 | 150644354 | 150690786 | - | 150 | 100.0 | 0.56 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) | 0.0 |
| 1898 | CLRN1-AS1 | 20872 | uc011bny.1 | chr3 | 150570271 | 150797617 | + | 150 | 100.0 | 0.67 | 1 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 1898 | CLRN1 | 20874 | uc021xfs.1 | chr3 | 150644354 | 150690786 | - | 150 | 100.0 | 0.67 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 1898 | CLRN1 | 20874 | uc021xfu.1 | chr3 | 150660341 | 150690786 | - | 150 | 100.0 | 0.67 | 1 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) | 0.0 |
| 1898 | CLRN1 | 20874 | uc021xfv.1 | chr3 | 150660341 | 150690786 | - | 150 | 100.0 | 0.67 | 0 | 0.0 | E1 (0), I1 (100), E2 (0) | 0.0 |
| 1898 | CLRN1 | 20874 | uc021xfw.1 | chr3 | 150660341 | 150690786 | - | 150 | 100.0 | 0.67 | 1 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 1898 | CLRN1 | 20874 | uc031sbx.1 | chr3 | 150644354 | 150690786 | - | 150 | 100.0 | 0.67 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
- 7 geness
Feature Overlaps
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 1898 | cellmeth_recounts | PrEC: 0, LNCaP: 0, DU145: 18 |  |
| 1898 | cellmeth_diffreps_PrECvsDU145 | A=0, B=14, Length=380, Event=Up, log2FC=Inf, padj=0.000506195974236337 |  |
| 1898 | cellmeth_diffreps_LNCaPvsDU145 | A=0, B=13.1, Length=340, Event=Up, log2FC=Inf, padj=0.00251303816158297 |  |
| 1898 | cellexp | id=ENSG00000163646, name=CLRN1, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 1898 | cellexp | id=ENSG00000239265, name=CLRN1-AS1, PrEC=0, str=0, LNCaP=0, str=0, DU145=1, str=1 |  |
| 1898 | cellexp | id=ENSG00000243273, name=RP11-166N6.2, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 1898 | tcgaexp | gene=CLRN1, entrez=7401, pos=chr3:150600784-150690786(-), B=0, L=0, M=0, H=0 |  |
| 1898 | tcgaexp | gene=CLRN1-AS1, entrez=116933, pos=chr3:150570271-150797617(+), B=1, L=0, M=1, H=1 |  |