DMR 19170 chr12:45568401-45568850 (450bp)
| DMR Stats | |
|---|---|
| Position | chr12:45568401-45568850 (View on UCSC) |
| Width | 450bp |
| Genomic Context | exon |
| Nearest Genes | PLEKHA8P1 (0bp away) |
| ANODEV p-value | 0.00134989930162 |
| Frequencies | Benign: 5.0 (71.43%), Low: 0.0 (0.0%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19170 | PLEKHA8P1 | 6315 | uc001rom.2 | chr12 | 45566817 | 45609789 | - | 450 | 100.0 | 0.59 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (94.67), E3 (5.56) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 19170 | chr12 | 45568446 | 45568735 | wgEncodeRegDnaseClusteredV2 | 7 | score:328, srow:267098 |
| 19170 | chr12 | 45568144 | 45568419 | wgEncodeRegTfbsClusteredV3 | TAL1 | score:137, expCount:1, expNums:542, expScores:137, srow:914206 |
| 19170 | chr12 | 45568318 | 45568498 | phastConsElements100way | lod=736 | score:647, srow:1947028 |
| 19170 | chr12 | 45568662 | 45568707 | phastConsElements100way | lod=24 | score:308, srow:1947029 |
| 19170 | chr12 | 45568737 | 45568745 | phastConsElements100way | lod=21 | score:295, srow:1947030 |
- 5 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 19170 | cellmeth_recounts | PrEC: 9, LNCaP: 4, DU145: 15 |  |
| 19170 | cellexp | id=ENSG00000134297, name=PLEKHA8P1, PrEC=377, str=620, LNCaP=215, str=219, DU145=476, str=360 |  |
| 19170 | tcgaexp | gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512 |  |
| 19170 | tcgaexp | gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045 |  |
| 19170 | tcgaexp | gene=PLEKHA8P1, entrez=51054, pos=chr12:45566817-45609789(-), B=131, L=118, M=87, H=78 |  |