DMR 19201 chr12:49643001-49643150 (150bp)
| DMR Stats | |
|---|---|
| Position | chr12:49643001-49643150 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | TUBA1C (0bp away) |
| ANODEV p-value | 0.00241092837729 |
| Frequencies | Benign: 5.0 (71.43%), Low: 0.0 (0.0%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19201 | TUBA1C | 6378 | uc010smh.1 | chr12 | 49621709 | 49667113 | + | 150 | 100.0 | 0.22 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
- 1 genes
Feature Overlaps
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 19201 | cellmeth_recounts | PrEC: 3, LNCaP: 11, DU145: 9 |  |
| 19201 | cellexp | id=ENSG00000167553, name=TUBA1C, PrEC=26164, str=8060, LNCaP=5677, str=10037, DU145=15587, str=24150 |  |
| 19201 | cellexp | id=ENSG00000258101, name=RP11-977B10.2, PrEC=14, str=5, LNCaP=33, str=18, DU145=14, str=6 |  |
| 19201 | tcgaexp | gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512 |  |
| 19201 | tcgaexp | gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045 |  |
| 19201 | tcgaexp | gene=TUBA1C, entrez=84790, pos=chr12:49621709-49667113(+), B=4216, L=4868, M=4876, H=5479 |  |