DMR 19228 chr12:52449751-52450000 (250bp)
| DMR Stats | |
|---|---|
| Position | chr12:52449751-52450000 (View on UCSC) |
| Width | 250bp |
| Genomic Context | promoter |
| Nearest Genes | NR4A1 (0bp away) |
| ANODEV p-value | 0.00188203841149 |
| Frequencies | Benign: 5.0 (71.43%), Low: 1.0 (16.67%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19228 | NR4A1 | 6438 | uc001rzs.3 | chr12 | 52445186 | 52453291 | + | 250 | 100.0 | 0.15 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (25.2), E4 (52), I4 (23.2), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 19228 | NR4A1 | 6438 | uc001rzt.3 | chr12 | 52445186 | 52453291 | + | 250 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (25.2), E3 (52), I3 (23.2), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
| 19228 | NR4A1 | 6438 | uc010sno.2 | chr12 | 52416616 | 52453291 | + | 250 | 100.0 | 0.15 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (25.2), E4 (52), I4 (23.2), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 19228 | chr12 | 52449121 | 52450530 | wgEncodeRegDnaseClusteredV2 | 26 | score:479, srow:271285 |
| 19228 | chr12 | 52443378 | 52455598 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:55, expNums:11,22,61,62,78,104,105,123,124,130,131,147,163,168,191,192,229,279,283,306,307,308,326,328,330,332,334,336,338,340,362,403,445,446,447,461,465,523,525,563,564,577,583,585,596,599,602,610,613,616,622,632,633,634,637, expScores:257,153,646,739,196,399,339,269,343,293,433,298,215,307,1000,454,728,231,194,1000,185,383,349,253,353,267,566,589,266,257,192,234,85,702,239,127,228,198,163,193,217,226,386,954,1000,139,166,164,155,418,246,341,255,590,233, srow:933973 |
| 19228 | chr12 | 52449741 | 52449753 | tfbsConsSites | V$MAZR_01 | score:920, zScore:2.58, srow:1152576 |
| 19228 | chr12 | 52449798 | 52449810 | tfbsConsSites | V$MZF1_02 | score:859, zScore:1.74, srow:1152577 |
| 19228 | chr12 | 52449893 | 52449902 | tfbsConsSites | V$MYB_Q6 | score:923, zScore:1.89, srow:1152578 |
| 19228 | chr12 | 52449901 | 52449918 | tfbsConsSites | V$CEBP_C | score:808, zScore:1.74, srow:1152579 |
| 19228 | chr12 | 52449908 | 52449924 | tfbsConsSites | V$LUN1_01 | score:721, zScore:1.97, srow:1152580 |
| 19228 | chr12 | 52449912 | 52449921 | tfbsConsSites | V$HMX1_01 | score:810, zScore:1.68, srow:1152581 |
| 19228 | chr12 | 52449821 | 52449821 | cosmic | COSM1646523 | srow:282477 |
| 19228 | chr12 | 52449821 | 52449821 | cosmic | COSM694240 | srow:282478 |
| 19228 | chr12 | 52449825 | 52449825 | cosmic | COSM1512227 | srow:282479 |
| 19228 | chr12 | 52449825 | 52449825 | cosmic | COSM1512228 | srow:282480 |
| 19228 | chr12 | 52449850 | 52449850 | cosmic | COSM1646522 | srow:282481 |
| 19228 | chr12 | 52449850 | 52449850 | cosmic | COSM694239 | srow:282482 |
| 19228 | chr12 | 52449880 | 52449880 | cosmic | COSM190925 | srow:282483 |
| 19228 | chr12 | 52449923 | 52449923 | cosmic | COSM190926 | srow:282484 |
| 19228 | chr12 | 52449742 | 52449753 | phastConsElements100way | lod=19 | score:285, srow:1981539 |
| 19228 | chr12 | 52449780 | 52449798 | phastConsElements100way | lod=77 | score:423, srow:1981540 |
| 19228 | chr12 | 52449811 | 52449818 | phastConsElements100way | lod=94 | score:443, srow:1981541 |
| 19228 | chr12 | 52449820 | 52449821 | phastConsElements100way | lod=38 | score:354, srow:1981542 |
| 19228 | chr12 | 52449823 | 52449830 | phastConsElements100way | lod=111 | score:460, srow:1981543 |
| 19228 | chr12 | 52449832 | 52449851 | phastConsElements100way | lod=218 | score:526, srow:1981544 |
| 19228 | chr12 | 52449853 | 52449866 | phastConsElements100way | lod=174 | score:504, srow:1981545 |
| 19228 | chr12 | 52449868 | 52449884 | phastConsElements100way | lod=196 | score:516, srow:1981546 |
| 19228 | chr12 | 52449886 | 52449923 | phastConsElements100way | lod=453 | score:599, srow:1981547 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 19228 | cellmeth_recounts | PrEC: 19, LNCaP: 6, DU145: 3 |  |
| 19228 | cellmeth_diffreps_PrECvsLNCaP | A=30, B=5, Length=340, Event=Down, log2FC=-2.58, padj=0.000369993850487529 |  |
| 19228 | cellmeth_diffreps_PrECvsDU145 | A=30, B=3, Length=380, Event=Down, log2FC=-3.32, padj=2.80572507940989e-05 |  |
| 19228 | cellexp | id=ENSG00000123358, name=NR4A1, PrEC=247, str=20, LNCaP=882, str=473, DU145=1179, str=562 |  |
| 19228 | tcgaexp | gene=NR4A1, entrez=3164, pos=chr12:52416616-52453291(+), B=41496, L=31874, M=31946, H=24768 |  |
| 19228 | tcgaexp | gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512 |  |
| 19228 | tcgaexp | gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045 |  |