DMR 19235 chr12:53011951-53012100 (150bp)
| DMR Stats | |
|---|---|
| Position | chr12:53011951-53012100 (View on UCSC) |
| Width | 150bp |
| Genomic Context | promoter |
| Nearest Genes | KRT73 (0bp away) |
| ANODEV p-value | 0.00492828636877 |
| Frequencies | Benign: 5.0 (71.43%), Low: 2.0 (33.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19235 | KRT73 | 6461 | uc001sas.3 | chr12 | 53001354 | 53012343 | - | 150 | 100.0 | 0.17 | 0 | 100.0 | E1 (100), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 19235 | chr12 | 53012006 | 53012235 | wgEncodeRegDnaseClusteredV2 | 3 | score:167, srow:271949 |
| 19235 | chr12 | 53011944 | 53011964 | tfbsConsSites | V$NRSF_01 | score:738, zScore:2.18, srow:1153971 |
| 19235 | chr12 | 53012033 | 53012046 | tfbsConsSites | V$RREB1_01 | score:830, zScore:2.03, srow:1153972 |
| 19235 | chr12 | 53012093 | 53012107 | tfbsConsSites | V$SPZ1_01 | score:895, zScore:2.19, srow:1153973 |
| 19235 | chr12 | 53011989 | 53011989 | cosmic | COSM1362548 | srow:283570 |
| 19235 | chr12 | 53011993 | 53011993 | cosmic | COSM228582 | srow:283571 |
| 19235 | chr12 | 53012005 | 53012005 | cosmic | COSM297434 | srow:283572 |
| 19235 | chr12 | 53012010 | 53012010 | cosmic | COSM175779 | srow:283573 |
| 19235 | chr12 | 53012018 | 53012018 | cosmic | COSM1362549 | srow:283574 |
| 19235 | chr12 | 53012063 | 53012063 | cosmic | COSM1362550 | srow:283575 |
| 19235 | chr12 | 53012064 | 53012064 | cosmic | COSM71382 | srow:283576 |
| 19235 | chr12 | 53012078 | 53012078 | cosmic | COSM1512524 | srow:283577 |
| 19235 | chr12 | 53012081 | 53012081 | cosmic | COSM416184 | srow:283578 |
| 19235 | chr12 | 53012085 | 53012085 | cosmic | COSM1212845 | srow:283579 |
| 19235 | chr12 | 53012087 | 53012087 | cosmic | COSM282317 | srow:283580 |
| 19235 | chr12 | 53011953 | 53011953 | phastConsElements100way | lod=16 | score:268, srow:1985807 |
| 19235 | chr12 | 53011959 | 53011960 | phastConsElements100way | lod=22 | score:300, srow:1985808 |
| 19235 | chr12 | 53011962 | 53011963 | phastConsElements100way | lod=42 | score:363, srow:1985809 |
| 19235 | chr12 | 53011967 | 53011969 | phastConsElements100way | lod=29 | score:327, srow:1985810 |
| 19235 | chr12 | 53011971 | 53011973 | phastConsElements100way | lod=39 | score:356, srow:1985811 |
| 19235 | chr12 | 53011979 | 53011983 | phastConsElements100way | lod=52 | score:385, srow:1985812 |
| 19235 | chr12 | 53011989 | 53011989 | phastConsElements100way | lod=15 | score:262, srow:1985813 |
| 19235 | chr12 | 53011995 | 53011999 | phastConsElements100way | lod=26 | score:316, srow:1985814 |
| 19235 | chr12 | 53012057 | 53012058 | phastConsElements100way | lod=17 | score:274, srow:1985815 |
| 19235 | chr12 | 53012068 | 53012071 | phastConsElements100way | lod=19 | score:285, srow:1985816 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 19235 | cellmeth_recounts | PrEC: 6, LNCaP: 1, DU145: 4 |  |
| 19235 | cellexp | id=ENSG00000186049, name=KRT73, PrEC=0, str=0, LNCaP=1, str=3, DU145=0, str=0 |  |
| 19235 | tcgameth | site:cg13928961, B=0.89, L=0.87, H=0.81 |  |
| 19235 | tcgaexp | gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512 |  |
| 19235 | tcgaexp | gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045 |  |
| 19235 | tcgaexp | gene=KRT73, entrez=319101, pos=chr12:53001354-53012343(-), B=0, L=0, M=1, H=3 |  |