DMR 194 chr1:32089951-32090250 (300bp)
| DMR Stats | |
|---|---|
| Position | chr1:32089951-32090250 (View on UCSC) |
| Width | 300bp |
| Genomic Context | intron |
| Nearest Genes | HCRTR1 (0bp away) |
| ANODEV p-value | 0.00288324551776 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 0.0 (0.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 194 | HCRTR1 | 571 | uc001btc.4 | chr1 | 32083301 | 32093214 | + | 300 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0), I8 (0), E9 (0) | 0.0 |
| 194 | HCRTR1 | 571 | uc001btd.2 | chr1 | 32084641 | 32092919 | + | 300 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0) | 0.0 |
| 194 | HCRTR1 | 571 | uc009vtx.2 | chr1 | 32083301 | 32092919 | + | 300 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0), I8 (0), E9 (0) | 0.0 |
| 194 | HCRTR1 | 571 | uc010ogl.2 | chr1 | 32084652 | 32098119 | + | 300 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 194 | chr1 | 32089961 | 32090455 | wgEncodeRegDnaseClusteredV2 | 9 | score:417, srow:25947 |
| 194 | chr1 | 32089948 | 32090337 | wgEncodeRegTfbsClusteredV3 | MAX | score:201, expCount:1, expNums:223, expScores:201, srow:91965 |
| 194 | chr1 | 32090188 | 32090294 | wgEncodeRegTfbsClusteredV3 | ELF1 | score:423, expCount:1, expNums:217, expScores:423, srow:91966 |
- 3 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 194 | cellmeth_recounts | PrEC: 0, LNCaP: 3, DU145: 1 |  |
| 194 | cellexp | id=ENSG00000121764, name=HCRTR1, PrEC=2, str=0, LNCaP=1, str=0, DU145=4, str=6 |  |
| 194 | tcgaexp | gene=HCRTR1, entrez=3061, pos=chr1:32083301-32098119(+), B=1, L=1, M=1, H=1 |  |
| 194 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |