DMR 2013 chr3:194407901-194408350 (450bp)

DMR Stats
Positionchr3:194407901-194408350 (View on UCSC)
Width450bp
Genomic Contextexon
Nearest GenesFAM43A (0bp away)
ANODEV p-value0.00926908447641
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 3.0 (33.33 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
2013 FAM43A 21182 uc003fuj.3 chr3 194406622 194409766 + 450 100.0 0.02 0 0.0 E1 (100) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
2013 chr3 194406726 194409595 wgEncodeRegDnaseClusteredV2 122 score:1000, srow:861592
2013 chr3 194407315 194407970 wgEncodeRegTfbsClusteredV3 E2F1 score:583, expCount:1, expNums:572, expScores:583, srow:2977700
2013 chr3 194407449 194409402 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:14, expNums:22,105,123,124,206,207,283,326,328,330,332,336,340,619, expScores:145,453,290,274,191,335,118,455,277,221,373,177,365,107, srow:2977702
2013 chr3 194407598 194408694 wgEncodeRegTfbsClusteredV3 EZH2 score:265, expCount:1, expNums:15, expScores:230, srow:2977705
2013 chr3 194407651 194408310 wgEncodeRegTfbsClusteredV3 SMARCB1 score:233, expCount:1, expNums:391, expScores:233, srow:2977706
2013 chr3 194407789 194407972 wgEncodeRegTfbsClusteredV3 CTCF score:112, expCount:1, expNums:606, expScores:112, srow:2977707
2013 chr3 194407807 194408246 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:133, expCount:1, expNums:250, expScores:133, srow:2977708
2013 chr3 194407849 194408172 wgEncodeRegTfbsClusteredV3 REST score:192, expCount:1, expNums:248, expScores:192, srow:2977709
2013 chr3 194407906 194408521 wgEncodeRegTfbsClusteredV3 CHD1 score:226, expCount:1, expNums:4, expScores:226, srow:2977710
2013 chr3 194408328 194408800 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:144, expCount:2, expNums:151,250, expScores:119,144, srow:2977711
2013 chr3 194408330 194408926 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:70, expNums:2,5,16,18,20,35,37,39,42,44,48,49,137,262,290,463,595,597,598,601,603,604,605,606,607,609,635,636,638,639,640,641,642,643,645,646,647,648,650,651,652,653,654,655,656,657,658,659,660,661,662,664,668,669,670,671,672,673,674,675,676,677,678,681,682,683,685,686,687,689, expScores:386,522,143,177,213,106,305,112,214,308,209,232,901,269,751,436,1000,1000,163,905,975,1000,961,552,822,115,1000,842,151,537,113,120,292,267,533,253,101,173,729,885,806,784,417,442,289,132,124,261,99,382,361,277,170,223,113,608,161,291,284,169,274,277,217,87,290,309,198,799,565,119, srow:2977712
2013 chr3 194408347 194408946 wgEncodeRegTfbsClusteredV3 CTBP2 score:126, expCount:1, expNums:348, expScores:126, srow:2977713
2013 chr3 194407903 194407912 tfbsConsSites V$GATA2_01 score:942, zScore:1.75, srow:3672526
2013 chr3 194407961 194407984 tfbsConsSites V$HTF_01 score:797, zScore:2.4, srow:3672527
2013 chr3 194407964 194407980 tfbsConsSites V$XBP1_01 score:786, zScore:1.75, srow:3672528
2013 chr3 194407966 194407979 tfbsConsSites V$ATF_01 score:827, zScore:1.74, srow:3672529
2013 chr3 194407968 194407978 tfbsConsSites V$AP1FJ_Q2 score:918, zScore:1.91, srow:3672530
2013 chr3 194407969 194407976 tfbsConsSites V$ATF6_01 score:896, zScore:2.09, srow:3672531
2013 chr3 194407969 194407980 tfbsConsSites V$CREB_02 score:869, zScore:1.99, srow:3672532
2013 chr3 194407987 194408005 tfbsConsSites V$AHRARNT_02 score:770, zScore:1.66, srow:3672533
2013 chr3 194408015 194408027 tfbsConsSites V$IK3_01 score:850, zScore:1.68, srow:3672534
2013 chr3 194408045 194408072 tfbsConsSites V$PAX5_01 score:793, zScore:2.15, srow:3672535
2013 chr3 194408095 194408115 tfbsConsSites V$NRSF_01 score:727, zScore:1.99, srow:3672536
2013 chr3 194408171 194408185 tfbsConsSites V$TAXCREB_02 score:752, zScore:1.8, srow:3672537
2013 chr3 194408177 194408188 tfbsConsSites V$CREB_02 score:954, zScore:3.44, srow:3672538
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  • 25 of 48 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
2013 cellmeth_recounts PrEC: 17, LNCaP: 314, DU145: 20
2013 cellmeth_diffreps_PrECvsLNCaP A=69, B=494, Length=1360, Event=Up, log2FC=2.84, padj=0
2013 cellmeth_diffreps_LNCaPvsDU145 A=562.32, B=26.19, Length=1700, Event=Down, log2FC=-4.42, padj=0
2013 cellexp id=ENSG00000185112, name=FAM43A, PrEC=271, str=434, LNCaP=5536, str=2137, DU145=116, str=21
2013 tcgameth site:cg00806461, B=0.21, L=0.38, H=0.32
2013 tcgaexp gene=FAM43A, entrez=131583, pos=chr3:194406622-194409766(+), B=1410, L=1077, M=1247, H=1434