DMR 20369 chr14:103598901-103599050 (150bp)
| DMR Stats | |
|---|---|
| Position | chr14:103598901-103599050 (View on UCSC) |
| Width | 150bp |
| Genomic Context | promoter |
| Nearest Genes | TNFAIP2 (0bp away) |
| ANODEV p-value | 0.0410713412527 |
| Frequencies | Benign: 6.0 (85.71%), Low: 2.0 (33.33%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20369 | TNFAIP2 | 8852 | uc001ymm.1 | chr14 | 103592664 | 103603776 | + | 150 | 100.0 | 1.65 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
| 20369 | TNFAIP2 | 8852 | uc010awo.1 | chr14 | 103592664 | 103603776 | + | 150 | 100.0 | 1.24 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 20369 | TNFAIP2 | 8852 | uc010txz.1 | chr14 | 103593342 | 103603776 | + | 150 | 100.0 | 1.65 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 20369 | chr14 | 103598506 | 103599235 | wgEncodeRegDnaseClusteredV2 | 26 | score:522, srow:381556 |
| 20369 | chr14 | 103598575 | 103599044 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:154, expCount:1, expNums:249, expScores:154, srow:1293193 |
| 20369 | chr14 | 103598614 | 103598993 | wgEncodeRegTfbsClusteredV3 | REST | score:198, expCount:1, expNums:189, expScores:198, srow:1293194 |
| 20369 | chr14 | 103598665 | 103598953 | wgEncodeRegTfbsClusteredV3 | FOXA1 | score:346, expCount:2, expNums:177,178, expScores:271,346, srow:1293195 |
| 20369 | chr14 | 103598995 | 103599290 | wgEncodeRegTfbsClusteredV3 | FOXP2 | score:155, expCount:1, expNums:255, expScores:155, srow:1293197 |
| 20369 | chr14 | 103599050 | 103599062 | tfbsConsSites | V$PAX3_01 | score:837, zScore:2.5, srow:1668242 |
| 20369 | chr14 | 103598903 | 103598916 | phastConsElements100way | lod=19 | score:285, srow:2887033 |
- 7 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 20369 | cellmeth_recounts | PrEC: 29, LNCaP: 45, DU145: 10 |  |
| 20369 | cellmeth_diffreps_PrECvsDU145 | A=964, B=54, Length=940, Event=Down, log2FC=-4.16, padj=0 |  |
| 20369 | cellmeth_diffreps_LNCaPvsDU145 | A=453.28, B=50.51, Length=900, Event=Down, log2FC=-3.17, padj=0 |  |
| 20369 | cellexp | id=ENSG00000185215, name=TNFAIP2, PrEC=894, str=3617, LNCaP=369, str=81, DU145=24119, str=13847 |  |
| 20369 | tcgaexp | gene=TNFAIP2, entrez=7127, pos=chr14:103592664-103603776(+), B=3268, L=3148, M=2900, H=2440 |  |