DMR 2042 chr4:126551-126700 (150bp)

DMR Stats
Positionchr4:126551-126700 (View on UCSC)
Width150bp
Genomic Contextintron
Nearest GenesZNF718, ZNF595 (0bp away)
ANODEV p-value0.00769950616706
FrequenciesBenign: 6.0 (85.71%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
2042 ZNF718 21252 uc003fzt.4 chr4 53227 156490 + 150 100.0 0.29 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0) 0.0
2042 ZNF595 21252 uc003fzu.1 chr4 53227 196092 + 150 100.0 0.29 1 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0) 0.0
2042 ZNF718 21253 uc003fzw.4 chr4 124402 156490 + 150 100.0 0.42 0 0.0 E1 (0), I1 (100), E2 (0) 0.0
2042 ZNF718 21253 uc010iaz.3 chr4 124386 156490 + 150 100.0 0.42 1 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) 0.0
  • 4 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
2042 chr4 124842 126841 cpgShore — values(x.gr)[overs$srow, ]:34972
  • 1 features

Omics Overlaps

Dmrid Omic Set Data Plot
2042 cellmeth_recounts PrEC: 5, LNCaP: 4, DU145: 10
2042 cellmeth_diffreps_PrECvsLNCaP A=31, B=4, Length=380, Event=Down, log2FC=-2.95, padj=5.83103587998984e-05
2042 cellexp id=ENSG00000250312, name=ZNF718, PrEC=319, str=382, LNCaP=355, str=423, DU145=533, str=559
2042 tcgaexp gene=YTHDC1, entrez=91746, pos=chr4:6027-69215824(-), B=4512, L=3976, M=4109, H=4458
2042 tcgaexp gene=ZNF595, entrez=152687, pos=chr4:53227-196092(+), B=502, L=637, M=656, H=769
2042 tcgaexp gene=ZNF718, entrez=255403, pos=chr4:53227-156490(+), B=244, L=237, M=227, H=291
2042 tcgaexp gene=DUX4L5, entrez=653545, pos=chr4:72836-191010142(+), B=0, L=0, M=0, H=0