DMR 20583 chr15:43939101-43939300 (200bp)
| DMR Stats | |
|---|---|
| Position | chr15:43939101-43939300 (View on UCSC) |
| Width | 200bp |
| Genomic Context | 3' end |
| Nearest Genes | CATSPER2 (0bp away) |
| ANODEV p-value | 0.00987008294623 |
| Frequencies | Benign: 5.0 (71.43%), Low: 2.0 (33.33%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20583 | CATSPER2 | 9433 | uc001zsh.3 | chr15 | 43922772 | 43941039 | - | 200 | 100.0 | 1.06 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (26.5), I4 (73.5), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 20583 | CATSPER2 | 9433 | uc001zsi.3 | chr15 | 43922772 | 43941039 | - | 200 | 100.0 | 0.5 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (26.5), I4 (73.5), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 20583 | CATSPER2 | 9433 | uc001zsj.3 | chr15 | 43922772 | 43941042 | - | 200 | 100.0 | 0.67 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (26.5), I5 (73.5), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 20583 | CATSPER2 | 9433 | uc001zsk.3 | chr15 | 43931634 | 43941039 | - | 200 | 100.0 | 0.83 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (26.5), I4 (73.5), E5 (0) | 0.0 |
| 20583 | CATSPER2 | 9433 | uc010bdm.3 | chr15 | 43922772 | 43940261 | - | 200 | 100.0 | 0.83 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (26.5), I3 (73.5), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 20583 | chr15 | 43939141 | 43939395 | wgEncodeRegDnaseClusteredV2 | 6 | score:340, srow:394507 |
| 20583 | chr15 | 43939097 | 43939345 | wgEncodeRegTfbsClusteredV3 | SPI1 | score:1000, expCount:2, expNums:107,230, expScores:1000,138, srow:1329194 |
| 20583 | chr15 | 43939243 | 43939264 | tfbsConsSites | V$MEF2_04 | score:739, zScore:1.85, srow:1721239 |
| 20583 | chr15 | 43939258 | 43939258 | cosmic | COSM1478145 | srow:393419 |
| 20583 | chr15 | 43939282 | 43939282 | cosmic | COSM962050 | srow:393420 |
| 20583 | chr15 | 43939238 | 43939265 | phastConsElements100way | lod=95 | score:444, srow:2981030 |
| 20583 | chr15 | 43939271 | 43939277 | phastConsElements100way | lod=28 | score:323, srow:2981031 |
| 20583 | chr15 | 43939280 | 43939313 | phastConsElements100way | lod=110 | score:459, srow:2981032 |
| 20583 | chr15 | 43938867 | 43940866 | cpgShore | — | values(x.gr)[overs$srow, ]:14375 |
- 9 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 20583 | cellmeth_recounts | PrEC: 9, LNCaP: 10, DU145: 6 |  |
| 20583 | cellexp | id=ENSG00000166762, name=CATSPER2, PrEC=166, str=295, LNCaP=242, str=128, DU145=61, str=27 |  |
| 20583 | cellexp | id=ENSG00000242866, name=STRC, PrEC=16, str=23, LNCaP=18, str=3, DU145=9, str=3 |  |
| 20583 | tcgaexp | gene=CATSPER2, entrez=117155, pos=chr15:43922772-43959900(-), B=53, L=65, M=72, H=77 |  |