DMR Stats | |
---|---|
Position | chr16:109601-109800 (View on UCSC) |
Width | 200bp |
Genomic Context | 3' end |
Nearest Genes | RHBDF1 (0bp away) |
ANODEV p-value | 0.00115249824856 |
Frequencies | Benign: 2.0 (28.57%), Low: 0.0 (0.0%), High: 8.0 (88.89 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
20932 | RHBDF1 | 10655 | uc002cfl.4 | chr16 | 108058 | 122629 | - | 200 | 100.0 | 0.41 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (35.5), I14 (64.5), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
20932 | chr16 | 109606 | 109855 | wgEncodeRegDnaseClusteredV2 | 2 | score:385, srow:427129 |
20932 | chr16 | 108833 | 110003 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:297, expCount:3, expNums:522,616,622, expScores:186,284,297, srow:1441105 |
20932 | chr16 | 109723 | 109732 | tfbsConsSites | V$HMX1_01 | score:840, zScore:2.18, srow:1867667 |
20932 | chr16 | 109723 | 109735 | tfbsConsSites | V$AREB6_01 | score:895, zScore:1.93, srow:1867668 |
20932 | chr16 | 109726 | 109746 | tfbsConsSites | V$NRSF_01 | score:712, zScore:1.75, srow:1867669 |
20932 | chr16 | 109761 | 109782 | tfbsConsSites | V$TCF11MAFG_01 | score:755, zScore:1.92, srow:1867670 |
20932 | chr16 | 109794 | 109799 | tfbsConsSites | V$AML1_01 | score:1000, zScore:1.78, srow:1867671 |
20932 | chr16 | 109736 | 109736 | cosmic | COSM1663918 | srow:418947 |
20932 | chr16 | 109659 | 109661 | phastConsElements100way | lod=13 | score:247, srow:3210054 |
20932 | chr16 | 109728 | 109743 | phastConsElements100way | lod=219 | score:527, srow:3210055 |
20932 | chr16 | 109745 | 109761 | phastConsElements100way | lod=215 | score:525, srow:3210056 |
20932 | chr16 | 109763 | 109782 | phastConsElements100way | lod=239 | score:536, srow:3210057 |
20932 | chr16 | 109784 | 109803 | phastConsElements100way | lod=246 | score:538, srow:3210058 |
20932 | chr16 | 108996 | 110995 | cpgShore | — | values(x.gr)[overs$srow, ]:15429 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
20932 | cellmeth_recounts | PrEC: 12, LNCaP: 16, DU145: 3 | |
20932 | cellmeth_diffreps_PrECvsDU145 | A=18, B=2, Length=320, Event=Down, log2FC=-3.17, padj=0.00412488368072607 | |
20932 | cellexp | id=ENSG00000007384, name=RHBDF1, PrEC=2329, str=4246, LNCaP=3254, str=1674, DU145=1660, str=1418 | |
20932 | tcgaexp | gene=RHBDF1, entrez=64285, pos=chr16:108058-126351(-), B=2302, L=2726, M=2709, H=2644 |