DMR 20933 chr16:129551-129700 (150bp)

DMR Stats
Positionchr16:129551-129700 (View on UCSC)
Width150bp
Genomic Contextexon
Nearest GenesMPG (0bp away)
ANODEV p-value0.00448954280363
FrequenciesBenign: 6.0 (85.71%), Low: 5.0 (83.33%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
20933 MPG 10656 uc002cfm.4 chr16 127018 135850 + 150 100.0 0.31 0 0.0 E1 (0), I1 (0), E2 (99.33), I2 (1.33), E3 (0), I3 (0), E4 (0) 0.0
20933 MPG 10656 uc002cfn.4 chr16 128169 135850 + 150 100.0 0.41 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (99.33), I3 (1.33), E4 (0), I4 (0), E5 (0) 0.0
20933 MPG 10656 uc002cfo.4 chr16 128169 135850 + 150 100.0 0.31 0 0.0 E1 (0), I1 (0), E2 (99.33), I2 (1.33), E3 (0), I3 (0), E4 (0) 0.0
20933 MPG 10656 uc010bqp.3 chr16 128169 133681 + 150 100.0 0.41 0 0.0 E1 (0), I1 (0), E2 (99.33), I2 (1.33), E3 (0) 0.0
  • 4 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
20933 chr16 129441 129595 wgEncodeRegDnaseClusteredV2 2 score:301, srow:427161
20933 chr16 129621 129995 wgEncodeRegDnaseClusteredV2 6 score:599, srow:427162
20933 chr16 129658 129666 tfbsConsSites V$ZIC1_01 score:926, zScore:1.91, srow:1867809
20933 chr16 129669 129686 tfbsConsSites V$AHR_01 score:810, zScore:2.46, srow:1867810
20933 chr16 129670 129682 tfbsConsSites V$MZF1_02 score:878, zScore:2.07, srow:1867811
20933 chr16 129673 129692 tfbsConsSites V$P53_01 score:701, zScore:2.16, srow:1867812
20933 chr16 129683 129703 tfbsConsSites V$STAT1_01 score:757, zScore:1.7, srow:1867813
20933 chr16 129683 129703 tfbsConsSites V$STAT3_01 score:792, zScore:2.4, srow:1867814
20933 chr16 129694 129706 tfbsConsSites V$AREB6_01 score:881, zScore:1.7, srow:1867815
20933 chr16 129562 129562 cosmic COSM1379479 srow:418995
20933 chr16 129575 129575 cosmic COSM124488 srow:418996
20933 chr16 129654 129654 cosmic COSM147998 srow:418997
20933 chr16 129659 129659 cosmic COSM1478523 srow:418998
20933 chr16 129665 129665 cosmic COSM967146 srow:418999
20933 chr16 129691 129691 cosmic COSM967148 srow:419000
20933 chr16 129592 129612 phastConsElements100way lod=84 score:432, srow:3210288
20933 chr16 129637 129638 phastConsElements100way lod=13 score:247, srow:3210289
20933 chr16 129640 129644 phastConsElements100way lod=45 score:370, srow:3210290
20933 chr16 129649 129665 phastConsElements100way lod=123 score:470, srow:3210291
20933 chr16 129667 129668 phastConsElements100way lod=19 score:285, srow:3210292
20933 chr16 129676 129680 phastConsElements100way lod=46 score:373, srow:3210293
20933 chr16 129685 129686 phastConsElements100way lod=21 score:295, srow:3210294
20933 chr16 129689 129703 phastConsElements100way lod=146 score:487, srow:3210295
20933 chr16 128632 130631 cpgShore — values(x.gr)[overs$srow, ]:15434
  • 24 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
20933 cellmeth_recounts PrEC: 30, LNCaP: 116, DU145: 8
20933 cellmeth_diffreps_PrECvsLNCaP A=8, B=34, Length=320, Event=Up, log2FC=2.09, padj=0.00117703416175705
20933 cellmeth_diffreps_PrECvsDU145 A=59, B=6, Length=420, Event=Down, log2FC=-3.3, padj=1.87422667467206e-10
20933 cellmeth_diffreps_LNCaPvsDU145 A=148.6, B=6.55, Length=820, Event=Down, log2FC=-4.5, padj=0
20933 cellexp id=ENSG00000103152, name=MPG, PrEC=1574, str=1008, LNCaP=1685, str=1030, DU145=1084, str=836
20933 tcgaexp gene=MPG, entrez=4350, pos=chr16:127018-135850(+), B=2982, L=3505, M=3312, H=2788