DMR 20934 chr16:135651-136050 (400bp)
| DMR Stats | |
|---|---|
| Position | chr16:135651-136050 (View on UCSC) |
| Width | 400bp |
| Genomic Context | 3' end |
| Nearest Genes | MPG, NPRL3 (0bp away) |
| ANODEV p-value | 0.000217838156348 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 1.0 (11.11 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20934 | MPG | 10656 | uc002cfm.4 | chr16 | 127018 | 135850 | + | 200 | 50.0 | 0.31 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (50) | 100.0 |
| 20934 | MPG | 10656 | uc002cfn.4 | chr16 | 128169 | 135850 | + | 200 | 50.0 | 0.41 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (50) | 100.0 |
| 20934 | MPG | 10656 | uc002cfo.4 | chr16 | 128169 | 135850 | + | 200 | 50.0 | 0.75 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (50) | 100.0 |
| 20934 | NPRL3 | 10657 | uc002cfp.2 | chr16 | 134273 | 188697 | - | 400 | 100.0 | 0.56 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (57.75), I14 (42.25), E15 (0) | 0.0 |
| 20934 | NPRL3 | 10657 | uc002cfq.3 | chr16 | 135804 | 188697 | - | 247 | 61.75 | 0.98 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (61.75) | 100.0 |
| 20934 | NPRL3 | 10657 | uc002cfr.3 | chr16 | 135804 | 188697 | - | 247 | 61.75 | 0.98 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (61.75) | 100.0 |
| 20934 | NPRL3 | 10657 | uc010uua.1 | chr16 | 134273 | 188333 | - | 400 | 100.0 | 0.92 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (100), E13 (0) | 0.0 |
| 20934 | NPRL3 | 10657 | uc021szl.1 | chr16 | 135804 | 188697 | - | 247 | 61.75 | 0.39 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (61.75) | 100.0 |
| 20934 | NPRL3 | 10657 | uc021szm.1 | chr16 | 135804 | 188697 | - | 247 | 61.75 | 0.92 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (61.75) | 100.0 |
| 20934 | NPRL3 | 10657 | uc021szn.1 | chr16 | 135804 | 188697 | - | 247 | 61.75 | 0.39 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (61.75) | 100.0 |
- 10 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 20934 | chr16 | 136041 | 136290 | wgEncodeRegDnaseClusteredV2 | 6 | score:328, srow:427170 |
| 20934 | chr16 | 133751 | 135721 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:617, expCount:12, expNums:22,105,192,206,207,259,334,336,461,465,527,637, expScores:160,585,211,393,281,376,163,180,138,302,167,134, srow:1441292 |
| 20934 | chr16 | 135645 | 135651 | tfbsConsSites | V$EN1_01 | score:969, zScore:1.71, srow:1867831 |
| 20934 | chr16 | 135716 | 135735 | tfbsConsSites | V$PPARA_01 | score:777, zScore:2.48, srow:1867832 |
| 20934 | chr16 | 135737 | 135742 | tfbsConsSites | V$AML1_01 | score:1000, zScore:1.78, srow:1867833 |
| 20934 | chr16 | 135771 | 135783 | tfbsConsSites | V$CEBP_01 | score:921, zScore:2.21, srow:1867834 |
| 20934 | chr16 | 135661 | 135661 | cosmic | COSM1301634 | srow:419011 |
| 20934 | chr16 | 135684 | 135684 | cosmic | COSM21722 | srow:419012 |
| 20934 | chr16 | 135654 | 135667 | phastConsElements100way | lod=93 | score:442, srow:3210344 |
| 20934 | chr16 | 135670 | 135670 | phastConsElements100way | lod=18 | score:280, srow:3210345 |
| 20934 | chr16 | 135672 | 135673 | phastConsElements100way | lod=27 | score:320, srow:3210346 |
| 20934 | chr16 | 135678 | 135679 | phastConsElements100way | lod=14 | score:255, srow:3210347 |
| 20934 | chr16 | 135681 | 135682 | phastConsElements100way | lod=44 | score:368, srow:3210348 |
| 20934 | chr16 | 135684 | 135700 | phastConsElements100way | lod=159 | score:495, srow:3210349 |
| 20934 | chr16 | 135702 | 135712 | phastConsElements100way | lod=107 | score:456, srow:3210350 |
| 20934 | chr16 | 135715 | 135715 | phastConsElements100way | lod=18 | score:280, srow:3210351 |
| 20934 | chr16 | 135720 | 135736 | phastConsElements100way | lod=155 | score:493, srow:3210352 |
| 20934 | chr16 | 135738 | 135748 | phastConsElements100way | lod=114 | score:462, srow:3210353 |
| 20934 | chr16 | 135753 | 135754 | phastConsElements100way | lod=24 | score:308, srow:3210354 |
| 20934 | chr16 | 135756 | 135758 | phastConsElements100way | lod=48 | score:377, srow:3210355 |
| 20934 | chr16 | 135802 | 135807 | phastConsElements100way | lod=21 | score:295, srow:3210356 |
| 20934 | chr16 | 135822 | 135827 | phastConsElements100way | lod=30 | score:330, srow:3210357 |
- 22 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 20934 | cellmeth_recounts | PrEC: 9, LNCaP: 11, DU145: 1 |  |
| 20934 | cellmeth_diffreps_PrECvsLNCaP | A=126, B=30, Length=440, Event=Down, log2FC=-2.07, padj=1.78515616671479e-13 |  |
| 20934 | cellmeth_diffreps_PrECvsDU145 | A=126, B=1, Length=480, Event=Down, log2FC=-6.98, padj=0 |  |
| 20934 | cellmeth_diffreps_LNCaPvsDU145 | A=29.93, B=0.94, Length=400, Event=Down, log2FC=-5, padj=1.31237658054591e-06 |  |
| 20934 | cellexp | id=ENSG00000103148, name=NPRL3, PrEC=4044, str=1619, LNCaP=6038, str=4481, DU145=2617, str=1896 |  |
| 20934 | cellexp | id=ENSG00000103152, name=MPG, PrEC=1574, str=1008, LNCaP=1685, str=1030, DU145=1084, str=836 |  |
| 20934 | tcgaexp | gene=MPG, entrez=4350, pos=chr16:127018-135850(+), B=2982, L=3505, M=3312, H=2788 |  |
| 20934 | tcgaexp | gene=NPRL3, entrez=8131, pos=chr16:134273-188697(-), B=1843, L=2423, M=2521, H=2379 |  |